Variant report

Variant	rs60167332
Chromosome Location	chr18:24550228-24550229
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12326934	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16943055	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16943181	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28433105	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3889349	0.86[EUR][1000 genomes]
rs3889350	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55976171	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56403102	0.85[EUR][1000 genomes]
rs57465464	0.82[AMR][1000 genomes]
rs58569620	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61089873	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61998173	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6508460	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6508461	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6508463	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67822335	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7227120	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7232288	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7237212	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7238255	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7243196	0.82[AMR][1000 genomes]
rs72880575	0.85[EUR][1000 genomes]
rs8085829	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8086337	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8088793	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8091201	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9807634	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1067103	chr18:24524011-24760469	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv543668	chr18:24524011-24760469	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1816690	chr18:24539782-24572241	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv978623	chr18:24544373-24561420	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24542400-24557600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr18:24545600-24590400	Weak transcription	Pancreas	Pancrea

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