Variant report
| Variant | rs60200067 |
|---|---|
| Chromosome Location | chr2:182634257-182634258 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
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| Variant related genes | Relation type |
|---|---|
| ENSG00000138434 | Chromatin interaction |
| ENSG00000260742 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10497586 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11891680 | 0.83[ASN][1000 genomes] |
| rs11898530 | 0.83[ASN][1000 genomes] |
| rs11902326 | 0.84[ASN][1000 genomes] |
| rs12612058 | 0.91[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12618902 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12620901 | 0.82[ASN][1000 genomes] |
| rs13387144 | 0.85[ASN][1000 genomes] |
| rs13396043 | 0.84[ASN][1000 genomes] |
| rs1528028 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16867494 | 0.91[ASN][1000 genomes] |
| rs16867495 | 0.89[ASN][1000 genomes] |
| rs16867496 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4597474 | 0.94[ASN][1000 genomes] |
| rs57000426 | 0.91[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs57281910 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57971040 | 0.91[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs59159077 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59956987 | 0.83[ASN][1000 genomes] |
| rs61246630 | 0.91[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6720578 | 0.85[ASN][1000 genomes] |
| rs7567399 | 0.85[ASN][1000 genomes] |
| rs7567560 | 0.85[ASN][1000 genomes] |
| rs7581484 | 0.85[ASN][1000 genomes] |
| rs7584725 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1005870 | chr2:181968637-182921439 | Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 2 | nsv536063 | chr2:181968637-182921439 | Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
| 3 | nsv1001558 | chr2:182590009-182732738 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
