Variant report

Variant	rs60202964
Chromosome Location	chr5:124840329-124840330
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10075091	1.00[EUR][1000 genomes]
rs1554281	1.00[EUR][1000 genomes]
rs56707415	1.00[EUR][1000 genomes]
rs56988571	1.00[EUR][1000 genomes]
rs57697012	1.00[EUR][1000 genomes]
rs59000628	1.00[EUR][1000 genomes]
rs59958060	1.00[EUR][1000 genomes]
rs61304237	1.00[EUR][1000 genomes]
rs61472360	1.00[EUR][1000 genomes]
rs6878929	1.00[EUR][1000 genomes]
rs6883449	1.00[EUR][1000 genomes]
rs6883628	1.00[EUR][1000 genomes]
rs6884059	1.00[EUR][1000 genomes]
rs73303332	1.00[EUR][1000 genomes]
rs73303384	1.00[EUR][1000 genomes]
rs73303399	1.00[EUR][1000 genomes]
rs73303400	1.00[EUR][1000 genomes]
rs73305305	1.00[EUR][1000 genomes]
rs73305308	1.00[EUR][1000 genomes]
rs73305320	1.00[EUR][1000 genomes]
rs73305337	1.00[EUR][1000 genomes]
rs73305339	1.00[EUR][1000 genomes]
rs73305342	1.00[EUR][1000 genomes]
rs73305345	1.00[EUR][1000 genomes]
rs73305365	1.00[EUR][1000 genomes]
rs73305368	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73305401	1.00[EUR][1000 genomes]
rs73307316	1.00[EUR][1000 genomes]
rs73312635	1.00[EUR][1000 genomes]
rs73316199	1.00[EUR][1000 genomes]
rs73318103	1.00[EUR][1000 genomes]
rs73318104	1.00[EUR][1000 genomes]
rs73318158	1.00[EUR][1000 genomes]
rs7729817	1.00[EUR][1000 genomes]
rs7730445	1.00[EUR][1000 genomes]
rs7732317	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv882824	chr5:124789500-124875058	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv882825	chr5:124836528-124877035	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124823400-124860400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124827800-124843600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:124837200-124840600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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