Variant report

Variant	rs60207619
Chromosome Location	chr14:31365299-31365300
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:31364498..31367422-chr14:31368554..31370574,2	K562	blood:
2	chr14:31359586..31361884-chr14:31363738..31366139,3	MCF-7	breast:
3	chr14:31363037..31365815-chr14:31368802..31371071,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10483358	1.00[AMR][1000 genomes]
rs6571367	1.00[AMR][1000 genomes]
rs6571370	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564169	chr14:30819087-31541494	Strong transcription Genic enhancers ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv901581	chr14:30978745-31585289	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv832762	chr14:31238634-31414038	Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv564173	chr14:31358377-31400682	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv901584	chr14:31358377-31409010	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31345000-31435400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:31345200-31369200	Weak transcription	Pancreas	Pancrea
3	chr14:31345400-31382600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:31346600-31382600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:31347000-31384600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:31347000-31394800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr14:31348000-31372600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:31348200-31376800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr14:31350200-31377800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:31353400-31367400	Weak transcription	NHLF	lung
11	chr14:31353400-31369200	Weak transcription	Fetal Intestine Small	intestine
12	chr14:31355200-31378400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:31355800-31414400	Weak transcription	Spleen	Spleen
14	chr14:31356000-31369200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr14:31356200-31367200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:31356200-31378800	Weak transcription	Brain Germinal Matrix	brain
17	chr14:31356200-31412800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr14:31357800-31370800	Weak transcription	K562	blood
19	chr14:31358000-31428200	Weak transcription	Small Intestine	intestine
20	chr14:31358400-31378400	Weak transcription	Aorta	Aorta
21	chr14:31359200-31371400	Weak transcription	HUVEC	blood vessel
22	chr14:31359600-31375200	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr14:31360200-31369200	Weak transcription	Fetal Stomach	stomach
24	chr14:31360200-31435600	Weak transcription	Gastric	stomach
25	chr14:31360400-31381800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr14:31360600-31365600	Strong transcription	HSMM	muscle
27	chr14:31361200-31379400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:31361400-31377200	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr14:31361600-31380600	Weak transcription	Stomach Mucosa	stomach
30	chr14:31361600-31384400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr14:31361800-31394200	Weak transcription	Fetal Brain Male	brain
32	chr14:31362000-31365800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr14:31362000-31381400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:31362200-31378800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr14:31362200-31414400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:31362400-31435400	Weak transcription	Colonic Mucosa	Colon
37	chr14:31362600-31365800	Strong transcription	Osteobl	bone
38	chr14:31362600-31366400	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr14:31362600-31366600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:31362600-31368600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr14:31362600-31382400	Strong transcription	Liver	Liver
42	chr14:31362800-31366400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr14:31362800-31369200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:31362800-31372200	Strong transcription	HepG2	liver
45	chr14:31363000-31365800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr14:31363000-31379200	Weak transcription	Fetal Heart	heart
47	chr14:31363000-31394400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr14:31363000-31430600	Weak transcription	Brain Angular Gyrus	brain
49	chr14:31363000-31435200	Weak transcription	Esophagus	oesophagus
50	chr14:31363200-31366200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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