Variant report

Variant	rs60220228
Chromosome Location	chr11:59411334-59411335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:59411267..59414686-chr11:59422826..59425210,4	K562	blood:
2	chr11:59409381..59412375-chr11:59418263..59422142,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61414509	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797571	chr11:59383323-59424688	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	esv1797737	chr11:59383323-59424688	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv832172	chr11:59396407-59431115	Genic enhancers Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59395600-59434600	Weak transcription	Stomach Mucosa	stomach
2	chr11:59402200-59411800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:59402200-59427000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:59402200-59432400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:59402200-59434000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:59402400-59427800	Strong transcription	Muscle Satellite Cultured Cells	--
7	chr11:59402400-59428200	Strong transcription	Primary T cells from cord blood	blood
8	chr11:59402600-59424200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:59402600-59426800	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:59402600-59427200	Strong transcription	Primary hematopoietic stem cells	blood
11	chr11:59402600-59427400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:59402600-59427600	Strong transcription	Adipose Nuclei	Adipose
13	chr11:59402600-59427600	Strong transcription	GM12878-XiMat	blood
14	chr11:59402600-59428000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:59402600-59428000	Strong transcription	Rectal Mucosa Donor 31	rectum
16	chr11:59402600-59428400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:59402600-59428400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:59402600-59428600	Strong transcription	Fetal Muscle Leg	muscle
19	chr11:59402600-59429000	Strong transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:59402600-59434000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:59402600-59434000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:59402600-59434200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr11:59402600-59434400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:59402800-59411400	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:59402800-59413200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:59402800-59426600	Strong transcription	Primary B cells from peripheral blood	blood
27	chr11:59402800-59427000	Strong transcription	Ovary	ovary
28	chr11:59402800-59427200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr11:59402800-59427200	Strong transcription	HUVEC	blood vessel
30	chr11:59402800-59428000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:59402800-59428000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr11:59402800-59428000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr11:59402800-59428000	Strong transcription	Placenta	Placenta
34	chr11:59402800-59428400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:59402800-59428600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr11:59402800-59428800	Strong transcription	Thymus	Thymus
37	chr11:59402800-59429800	Strong transcription	Dnd41	blood
38	chr11:59402800-59431600	Strong transcription	Fetal Intestine Large	intestine
39	chr11:59402800-59434200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr11:59402800-59434200	Strong transcription	Fetal Thymus	thymus
41	chr11:59402800-59434400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:59403000-59413000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:59403000-59426600	Strong transcription	Brain Hippocampus Middle	brain
44	chr11:59403000-59427000	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr11:59403000-59427200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:59403000-59429200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:59403200-59412400	Strong transcription	Left Ventricle	heart
48	chr11:59403200-59429000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:59403200-59434600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:59403400-59413000	Strong transcription	HUES64 Cell Line	embryonic stem cell

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