Variant report

Variant	rs60222151
Chromosome Location	chr3:85138129-85138130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11127881	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1376937	1.00[AMR][1000 genomes]
rs17022359	0.89[AMR][1000 genomes]
rs17022521	1.00[AMR][1000 genomes]
rs17022531	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022571	1.00[AMR][1000 genomes]
rs1901545	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2101343	0.81[AMR][1000 genomes]
rs2167605	0.90[AMR][1000 genomes]
rs28658170	1.00[AMR][1000 genomes]
rs28706252	1.00[AMR][1000 genomes]
rs41495948	0.90[AMR][1000 genomes]
rs56701506	0.81[AMR][1000 genomes]
rs57628546	1.00[AMR][1000 genomes]
rs58051057	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58222692	1.00[AMR][1000 genomes]
rs59867516	1.00[AMR][1000 genomes]
rs59905205	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60149715	0.81[AFR][1000 genomes]
rs60184399	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60319509	1.00[AMR][1000 genomes]
rs61212713	0.90[AMR][1000 genomes]
rs6770568	0.81[AMR][1000 genomes]
rs6783617	0.81[AMR][1000 genomes]
rs6791040	0.90[AMR][1000 genomes]
rs6793583	0.81[AMR][1000 genomes]
rs6809971	0.81[AMR][1000 genomes]
rs72903386	0.90[AMR][1000 genomes]
rs72905240	0.90[AMR][1000 genomes]
rs72905270	0.81[AMR][1000 genomes]
rs72905294	1.00[AMR][1000 genomes]
rs72905295	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72907103	1.00[AMR][1000 genomes]
rs72907149	1.00[AMR][1000 genomes]
rs72907158	1.00[AMR][1000 genomes]
rs72907161	1.00[AMR][1000 genomes]
rs72907167	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72907169	1.00[AMR][1000 genomes]
rs72907192	1.00[AMR][1000 genomes]
rs72909170	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72909172	0.90[AMR][1000 genomes]
rs72909174	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs72909176	0.90[AMR][1000 genomes]
rs72915067	0.82[AFR][1000 genomes]
rs7614097	1.00[AMR][1000 genomes]
rs7632253	0.90[AMR][1000 genomes]
rs7643603	1.00[AMR][1000 genomes]
rs7644008	1.00[AMR][1000 genomes]
rs9917693	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85132000-85140400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr3:85132000-85141600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:85136200-85138200	Enhancers	Brain Angular Gyrus	brain
4	chr3:85137200-85139800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:85137400-85138200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:85137800-85138800	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:85137800-85138800	Weak transcription	Brain Substantia Nigra	brain
8	chr3:85137800-85140000	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links