Variant report

Variant	rs60224531
Chromosome Location	chr2:128165098-128165099
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:128165019..128167453-chr2:128175077..128177186,2	K562	blood:
2	chr2:128150462..128152634-chr2:128164204..128165891,2	K562	blood:
3	chr2:128143825..128149210-chr2:128164212..128171253,11	K562	blood:
4	chr2:128138736..128141461-chr2:128164363..128167331,3	K562	blood:
5	chr2:128164915..128167319-chr2:128457695..128459898,2	MCF-7	breast:
6	chr2:128142542..128150787-chr2:128162650..128169241,18	MCF-7	breast:
7	chr2:128153413..128157536-chr2:128163810..128168101,4	K562	blood:
8	chr2:128164669..128167933-chr2:128169756..128171725,4	MCF-7	breast:
9	chr2:122288230..122290596-chr2:128165083..128168057,2	K562	blood:
10	chr2:128142687..128147811-chr2:128164209..128172701,12	MCF-7	breast:
11	chr2:128158177..128161164-chr2:128161262..128165115,3	K562	blood:
12	chr2:128143990..128147232-chr2:128162685..128167224,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000115718	Chromatin interaction
ENSG00000169967	Chromatin interaction
ENSG00000264229	Chromatin interaction
ENSG00000236682	Chromatin interaction
ENSG00000074054	Chromatin interaction
ENSG00000173349	Chromatin interaction

rs_ID	r²[population]
rs2069908	1.00[AFR][1000 genomes]
rs2069927	1.00[AFR][1000 genomes]
rs58314051	0.89[AFR][1000 genomes]

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128146400-128165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:128152600-128165800	Weak transcription	Aorta	Aorta
3	chr2:128156200-128165200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:128156800-128165200	Weak transcription	Pancreas	Pancrea
5	chr2:128157000-128165400	Weak transcription	Psoas Muscle	Psoas
6	chr2:128159200-128165200	Weak transcription	Right Ventricle	heart
7	chr2:128159200-128165200	Weak transcription	NHLF	lung
8	chr2:128159400-128165200	Weak transcription	HSMM	muscle
9	chr2:128159800-128165200	Weak transcription	Placenta	Placenta
10	chr2:128160200-128165200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:128160800-128165200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:128161400-128165400	Weak transcription	Ovary	ovary
13	chr2:128162000-128165800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:128162200-128165600	Enhancers	NHEK	skin
15	chr2:128162400-128165200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr2:128163000-128165200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:128163000-128165200	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr2:128163000-128165200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr2:128163000-128165200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr2:128163200-128165200	Weak transcription	Primary B cells from cord blood	blood
21	chr2:128163200-128165200	Weak transcription	Lung	lung
22	chr2:128163400-128165200	Weak transcription	Colonic Mucosa	Colon
23	chr2:128163600-128165200	Weak transcription	Left Ventricle	heart
24	chr2:128163600-128165800	Weak transcription	Esophagus	oesophagus
25	chr2:128163800-128165200	Weak transcription	Brain Hippocampus Middle	brain
26	chr2:128163800-128165200	Weak transcription	Right Atrium	heart
27	chr2:128164000-128165200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:128164000-128165800	Enhancers	HMEC	breast
29	chr2:128164200-128165800	Enhancers	Muscle Satellite Cultured Cells	--
30	chr2:128164200-128165800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr2:128164200-128166600	Enhancers	Fetal Thymus	thymus
32	chr2:128164400-128165400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr2:128164400-128165800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr2:128164400-128166400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr2:128164600-128165200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr2:128164600-128165200	Enhancers	Fetal Intestine Small	intestine
37	chr2:128164600-128165200	Enhancers	Fetal Muscle Leg	muscle
38	chr2:128164600-128165200	Enhancers	Dnd41	blood
39	chr2:128164600-128165200	Enhancers	HepG2	liver
40	chr2:128164600-128165800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr2:128164800-128165200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr2:128164800-128165200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr2:128164800-128165200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr2:128164800-128165200	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr2:128164800-128165200	Enhancers	Primary T cells fromperipheralblood	blood
46	chr2:128164800-128165200	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr2:128164800-128165200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr2:128164800-128165200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr2:128164800-128165200	Enhancers	Liver	Liver
50	chr2:128164800-128165200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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