Variant report

Variant	rs60228766
Chromosome Location	chr10:52610738-52610739
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52568484..52571195-chr10:52609335..52611357,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10994643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10994668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259930	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12263043	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12265892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742973	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73326765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73326767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7908964	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035197	chr10:52446582-52622349	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52580400-52643200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:52585200-52617200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:52594800-52617200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:52598200-52622400	Weak transcription	Fetal Intestine Small	intestine
5	chr10:52602800-52619200	Weak transcription	Fetal Intestine Large	intestine
6	chr10:52605600-52612000	Weak transcription	Pancreas	Pancrea
7	chr10:52608400-52612000	Strong transcription	Liver	Liver
8	chr10:52608800-52612000	Weak transcription	HepG2	liver
9	chr10:52609000-52614200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:52609600-52611000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:52609600-52611000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:52609600-52611000	Enhancers	NHEK	skin
13	chr10:52609600-52611200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:52609800-52611200	Enhancers	NHDF-Ad	bronchial
15	chr10:52609800-52611800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr10:52609800-52611800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr10:52609800-52611800	Enhancers	A549	lung
18	chr10:52610000-52610800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:52610000-52611800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr10:52610000-52611800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:52610200-52610800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:52610200-52611000	Enhancers	NH-A	brain
23	chr10:52610200-52611400	Enhancers	NHLF	lung
24	chr10:52610400-52610800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:52610400-52611000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:52610400-52611000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr10:52610400-52611000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr10:52610400-52611000	Enhancers	Brain Germinal Matrix	brain
29	chr10:52610400-52612600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:52610400-52613000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:52610600-52611000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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