Variant report

Variant	rs60233922
Chromosome Location	chr14:65521743-65521744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65517563..65520454-chr14:65521693..65524951,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257365	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11851530	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2296314	0.86[ASN][1000 genomes]
rs2296320	0.86[ASN][1000 genomes]
rs73270847	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73270852	0.93[AFR][1000 genomes]
rs73270859	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65470400-65539600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr14:65471200-65546200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:65483400-65528000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:65501800-65543200	Weak transcription	Fetal Brain Male	brain
5	chr14:65502400-65523400	Weak transcription	Right Atrium	heart
6	chr14:65508200-65530800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:65508400-65527800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:65508400-65527800	Weak transcription	Colonic Mucosa	Colon
9	chr14:65508400-65528000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr14:65508600-65530800	Weak transcription	NHDF-Ad	bronchial
11	chr14:65508600-65542000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr14:65509600-65528000	Weak transcription	Fetal Kidney	kidney
13	chr14:65510200-65527800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr14:65511600-65528600	Weak transcription	NH-A	brain
15	chr14:65511800-65527800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:65514600-65523200	Weak transcription	K562	blood
17	chr14:65514600-65527600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr14:65514600-65527600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr14:65514600-65527600	Weak transcription	GM12878-XiMat	blood
20	chr14:65514800-65527800	Weak transcription	Colon Smooth Muscle	Colon
21	chr14:65514800-65536200	Weak transcription	Small Intestine	intestine
22	chr14:65515200-65528000	Weak transcription	HUVEC	blood vessel
23	chr14:65515200-65528600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:65515200-65530000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr14:65515400-65527800	Weak transcription	Hela-S3	cervix
26	chr14:65515400-65527800	Weak transcription	NHEK	skin
27	chr14:65515600-65527800	Weak transcription	HMEC	breast
28	chr14:65517200-65524000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr14:65517400-65523600	Weak transcription	Psoas Muscle	Psoas
30	chr14:65517400-65527800	Weak transcription	Stomach Mucosa	stomach
31	chr14:65519000-65526000	Strong transcription	Primary T cells from cord blood	blood
32	chr14:65519200-65522000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr14:65519200-65522000	Strong transcription	Brain Angular Gyrus	brain
34	chr14:65519200-65522200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr14:65519200-65524000	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr14:65519200-65524000	Strong transcription	Fetal Intestine Large	intestine
37	chr14:65519400-65522000	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr14:65519400-65522200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:65519400-65524000	Strong transcription	Brain Hippocampus Middle	brain
40	chr14:65519600-65521800	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr14:65519600-65521800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr14:65519600-65521800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr14:65519600-65521800	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr14:65519600-65522000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:65519600-65522200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:65519600-65522200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:65519600-65522200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr14:65519600-65522200	Strong transcription	Brain Cingulate Gyrus	brain
49	chr14:65519600-65523200	Strong transcription	Stomach Smooth Muscle	stomach
50	chr14:65519600-65523800	Strong transcription	Fetal Brain Female	brain

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