Variant report

Variant	rs60247243
Chromosome Location	chr7:104002334-104002335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61311662	1.00[EUR][1000 genomes]
rs6953110	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73403817	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608067	chr7:103944237-104029408	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104001000-104002600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:104001600-104003000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:104001600-104005200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:104001800-104002400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:104001800-104002800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:104001800-104003000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:104002000-104002400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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