Variant report

Variant	rs60258106
Chromosome Location	chr1:225070942-225070943
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs2449266	1.00[ASN][1000 genomes]
rs2501089	1.00[ASN][1000 genomes]
rs4484895	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55692366	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56386111	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56981420	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57762550	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58253035	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58465537	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59384753	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60266138	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686436	1.00[ASN][1000 genomes]
rs74146288	1.00[ASN][1000 genomes]
rs74146289	1.00[ASN][1000 genomes]
rs74146292	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146297	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146299	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146300	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146615	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74146620	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74146622	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74147103	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149407	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149408	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149409	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149411	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74149412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149413	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149415	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74149424	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225063000-225071600	Weak transcription	Ovary	ovary
2	chr1:225067000-225073000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:225067400-225071800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr1:225068200-225071400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:225068600-225072000	Weak transcription	Fetal Stomach	stomach
6	chr1:225068800-225071400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr1:225069000-225072000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr1:225069000-225072400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr1:225069200-225071000	Weak transcription	Fetal Intestine Small	intestine
10	chr1:225069200-225071200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:225069600-225071800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:225069600-225071800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:225069600-225073400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:225069600-225073400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:225069800-225071800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr1:225069800-225072600	Weak transcription	A549	lung
17	chr1:225070000-225071600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr1:225070000-225071600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr1:225070000-225071600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr1:225070200-225072800	Enhancers	Fetal Lung	lung
21	chr1:225070400-225071600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr1:225070600-225071600	Weak transcription	Liver	Liver
23	chr1:225070800-225072800	Enhancers	Fetal Intestine Large	intestine

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