Variant report

Variant	rs60261704
Chromosome Location	chr15:76592668-76592669
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:76585221..76587431-chr15:76590533..76592803,2	K562	blood:
2	chr15:76591467..76593995-chr15:76626637..76628156,2	K562	blood:
3	chr15:76591677..76593698-chr15:76599453..76601197,2	MCF-7	breast:
4	chr15:76582923..76594852-chr15:76601949..76606997,18	MCF-7	breast:
5	chr15:76592629..76596591-chr15:76598250..76600495,3	MCF-7	breast:
6	chr15:76591467..76593414-chr15:76626364..76628156,2	K562	blood:
7	chr15:76584135..76596152-chr15:76600630..76606670,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140374	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1047357	0.85[AFR][1000 genomes]
rs11854972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11856470	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857880	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2469208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55831300	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55923544	0.84[AMR][1000 genomes]
rs56220133	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56233972	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56313024	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59691037	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60060261	0.84[AFR][1000 genomes]
rs62027004	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027007	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027010	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027014	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027016	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027019	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62027059	0.86[EUR][1000 genomes]
rs62030172	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62030183	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62030184	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030186	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030187	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030191	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030230	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62030234	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62030240	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6495195	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7167004	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7175022	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736846	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72736862	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736888	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72736892	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042654	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76556800-76594600	Weak transcription	Esophagus	oesophagus
2	chr15:76558000-76603000	Weak transcription	Aorta	Aorta
3	chr15:76573200-76593200	Weak transcription	Right Ventricle	heart
4	chr15:76574800-76601400	Weak transcription	Pancreas	Pancrea
5	chr15:76574800-76602000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr15:76576200-76602800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:76579200-76602000	Weak transcription	Thymus	Thymus
8	chr15:76579400-76592800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:76579600-76602000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:76579800-76593000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr15:76580200-76596000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr15:76580400-76593200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:76580600-76600400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr15:76582400-76594400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr15:76583600-76602000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:76583800-76602000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:76584000-76601400	Weak transcription	Placenta	Placenta
18	chr15:76584600-76602400	Weak transcription	Primary B cells from cord blood	blood
19	chr15:76584800-76602000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:76584800-76602200	Weak transcription	Fetal Thymus	thymus
21	chr15:76585000-76602000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:76585200-76602400	Weak transcription	Primary T cells from cord blood	blood
23	chr15:76586200-76602000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:76586200-76602400	Weak transcription	NH-A	brain
25	chr15:76586400-76597600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr15:76586400-76601800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr15:76586400-76602000	Weak transcription	Stomach Mucosa	stomach
28	chr15:76586400-76602400	Weak transcription	Brain Hippocampus Middle	brain
29	chr15:76586800-76594200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:76588000-76602000	Weak transcription	Psoas Muscle	Psoas
31	chr15:76589600-76602000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:76590600-76592800	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr15:76590800-76593400	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr15:76590800-76600600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr15:76591000-76593000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr15:76591000-76593200	Weak transcription	Hela-S3	cervix
37	chr15:76591000-76593400	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr15:76591000-76602000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:76591000-76602000	Weak transcription	Ovary	ovary
40	chr15:76591400-76593000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:76591400-76593000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:76591600-76592800	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr15:76591600-76593000	Enhancers	Duodenum Mucosa	Duodenum
44	chr15:76591600-76593000	Enhancers	GM12878-XiMat	blood
45	chr15:76591600-76601800	Weak transcription	NHEK	skin
46	chr15:76591800-76592800	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr15:76591800-76596400	Weak transcription	Fetal Intestine Small	intestine
48	chr15:76591800-76600600	Weak transcription	HMEC	breast
49	chr15:76592000-76593200	Weak transcription	Lung	lung
50	chr15:76592000-76593400	Enhancers	K562	blood

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