Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:98261995..98270397-chr5:98280624..98292060,15	K562	blood:
2	chr5:98263097..98266968-chr5:98281665..98283543,3	K562	blood:
3	chr5:98275105..98276792-chr5:98280634..98283981,3	K562	blood:
4	chr5:98274709..98276765-chr5:98282972..98284478,2	K562	blood:

Variant related genes	Relation type
ENSG00000153922	Chromatin interaction
ENSG00000248489	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv882416	chr5:98146106-98312447	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv537819	chr5:98253348-98299646	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98266200-98283600	Weak transcription	Colonic Mucosa	Colon
2	chr5:98266600-98291400	Weak transcription	Brain Germinal Matrix	brain
3	chr5:98266800-98283200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr5:98274800-98297200	Weak transcription	Thymus	Thymus
5	chr5:98278600-98299400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:98279400-98298400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:98281400-98283400	Enhancers	Right Atrium	heart
8	chr5:98281600-98283600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:98282200-98283200	Weak transcription	Right Ventricle	heart
10	chr5:98282400-98283800	Enhancers	K562	blood
11	chr5:98282600-98290400	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:98282800-98283200	Enhancers	Brain Substantia Nigra	brain
13	chr5:98282800-98283600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:98282800-98283600	Enhancers	NHEK	skin
15	chr5:98282800-98283800	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr5:98283000-98283400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr5:98283000-98283400	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr5:98283000-98283600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr5:98283000-98283600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr5:98283000-98283600	Enhancers	HMEC	breast
21	chr5:98283000-98283800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr5:98283000-98283800	Enhancers	Stomach Mucosa	stomach

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