Variant report

Variant	rs60302297
Chromosome Location	chr14:55654475-55654476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:55648437..55651811-chr14:55651962..55655981,4	K562	blood:
2	chr14:55516908..55519746-chr14:55654326..55658338,3	K562	blood:
3	chr14:55653901..55655851-chr14:55656440..55658540,2	MCF-7	breast:
4	chr14:55643693..55646676-chr14:55654219..55656043,3	K562	blood:

Variant related genes	Relation type
ENSG00000126787	Chromatin interaction
ENSG00000168175	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10129944	1.00[EUR][1000 genomes]
rs10132251	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133318	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10134533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135042	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10137382	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10138287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10140700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10141962	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142150	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142435	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143190	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146432	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10148371	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10149038	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10151981	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10438128	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13379284	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128204	1.00[EUR][1000 genomes]
rs17128286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128411	1.00[EUR][1000 genomes]
rs28415601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28458773	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28459500	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28488729	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28584735	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34630492	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60342915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9323281	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035158	chr14:55638386-55684228	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55598600-55656600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:55605200-55656000	Strong transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:55605400-55657000	Weak transcription	Fetal Kidney	kidney
4	chr14:55606600-55656000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:55607000-55656000	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:55607600-55655200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:55610600-55655400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:55610600-55655600	Strong transcription	Dnd41	blood
9	chr14:55610800-55656000	Strong transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:55611000-55656000	Weak transcription	Fetal Heart	heart
11	chr14:55611600-55656600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:55613400-55657800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr14:55623600-55657000	Weak transcription	Fetal Muscle Leg	muscle
14	chr14:55629200-55655600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:55630200-55656600	Weak transcription	Fetal Brain Female	brain
16	chr14:55632400-55656200	Weak transcription	HSMM	muscle
17	chr14:55634200-55655400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:55634400-55656200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr14:55637200-55655600	Strong transcription	Fetal Thymus	thymus
20	chr14:55638200-55656200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr14:55638600-55657200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr14:55645800-55656800	Weak transcription	Fetal Intestine Large	intestine
23	chr14:55645800-55657400	Weak transcription	Fetal Intestine Small	intestine
24	chr14:55646800-55657200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr14:55647400-55656000	Weak transcription	NH-A	brain
26	chr14:55647600-55655800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr14:55647800-55656000	Weak transcription	HMEC	breast
28	chr14:55647800-55656200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:55648400-55654800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:55648400-55656000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:55648400-55656200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr14:55648400-55656200	Weak transcription	NHLF	lung
33	chr14:55648400-55656600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr14:55648400-55656800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr14:55648800-55656200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:55649000-55656000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr14:55649000-55656000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr14:55649000-55656200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr14:55649200-55656000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:55649800-55656000	Weak transcription	HepG2	liver
41	chr14:55649800-55657600	Weak transcription	Placenta	Placenta
42	chr14:55650200-55656000	Weak transcription	Fetal Lung	lung
43	chr14:55650600-55656200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr14:55651000-55655000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr14:55651800-55654800	Weak transcription	Osteobl	bone
46	chr14:55651800-55656000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr14:55651800-55656000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr14:55651800-55656000	Weak transcription	NHEK	skin
49	chr14:55652000-55656000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:55652000-55656000	Weak transcription	A549	lung

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