Variant report

Variant	rs60334591
Chromosome Location	chr6:164199002-164199003
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164197060..164200042-chr6:164203079..164205559,3	K562	blood:
2	chr6:164154250..164155922-chr6:164197149..164199809,2	K562	blood:
3	chr6:164194495..164199881-chr6:164208039..164212902,6	K562	blood:
4	chr6:164158813..164160898-chr6:164198628..164201364,2	MCF-7	breast:
5	chr6:163834491..163837621-chr6:164197260..164199295,3	K562	blood:
6	chr6:164197559..164200585-chr6:164208850..164211951,4	K562	blood:
7	chr6:164197787..164199861-chr6:164232606..164234637,2	K562	blood:
8	chr6:164197788..164200009-chr6:164223920..164225941,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55683496	1.00[AMR][1000 genomes]
rs56029215	0.89[AFR][1000 genomes]
rs58250488	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59109163	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59173227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59348084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60518924	0.83[AFR][1000 genomes]
rs6920091	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246937	1.00[AMR][1000 genomes]
rs73784840	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784842	0.90[AFR][1000 genomes]
rs73784844	0.90[AFR][1000 genomes]
rs73784855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784862	0.85[AFR][1000 genomes]
rs73786555	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164186000-164200600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:164186200-164203600	Weak transcription	Right Atrium	heart
3	chr6:164197200-164204400	Enhancers	Fetal Muscle Leg	muscle
4	chr6:164197400-164199600	Enhancers	Fetal Muscle Trunk	muscle
5	chr6:164197400-164200600	Weak transcription	Brain Germinal Matrix	brain
6	chr6:164197600-164199800	Enhancers	Psoas Muscle	Psoas
7	chr6:164197600-164199800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:164197600-164201400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:164197600-164201800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:164198200-164199400	Enhancers	Fetal Stomach	stomach
11	chr6:164198200-164199800	Enhancers	HSMMtube	muscle
12	chr6:164198400-164199800	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:164198400-164201600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:164198600-164199200	Weak transcription	Right Ventricle	heart
15	chr6:164198600-164199400	Enhancers	Fetal Lung	lung
16	chr6:164198600-164201600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:164198800-164199200	Weak transcription	Left Ventricle	heart
18	chr6:164198800-164199600	Flanking Active TSS	K562	blood
19	chr6:164199000-164199200	Flanking Active TSS	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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