Variant report

Variant	rs60335739
Chromosome Location	chr11:47148728-47148729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:47147394..47149294-chr11:47151923..47153626,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255520	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12574558	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576831	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12576839	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12578030	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17197500	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17197619	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17197710	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17790246	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790306	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17790336	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790342	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17790420	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572092	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4647713	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55968738	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57012996	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57964319	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59689332	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs60041842	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60088916	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60174717	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60201196	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61142746	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61896120	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896121	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896122	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896124	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896125	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896126	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61896131	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61896132	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897776	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897777	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897782	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897784	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897786	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61897788	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897791	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61897843	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61897851	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897852	0.96[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897853	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897854	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61897855	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61897856	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61897858	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61899284	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61899285	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61899293	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61899294	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47124600-47159000	Weak transcription	Primary T cells from cord blood	blood
2	chr11:47129400-47158000	Weak transcription	Aorta	Aorta
3	chr11:47129400-47158600	Weak transcription	Spleen	Spleen
4	chr11:47130000-47159000	Weak transcription	Hela-S3	cervix
5	chr11:47131600-47150400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr11:47131600-47155000	Weak transcription	Right Atrium	heart
7	chr11:47131600-47159400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:47131800-47150600	Weak transcription	Fetal Stomach	stomach
9	chr11:47131800-47161200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr11:47132600-47155600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:47140400-47159000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr11:47141000-47159000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:47141000-47159400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:47141000-47164600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:47141200-47150600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:47141200-47151000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr11:47141200-47154200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:47141200-47158400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:47141200-47159400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:47143600-47164600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:47143600-47175200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr11:47144200-47159400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:47145200-47164800	Weak transcription	Ovary	ovary
24	chr11:47145200-47174800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr11:47145400-47151200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr11:47145400-47151800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr11:47145400-47152000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:47146000-47159400	Weak transcription	Colon Smooth Muscle	Colon
29	chr11:47146800-47157800	Weak transcription	HSMMtube	muscle
30	chr11:47147000-47151600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:47147000-47152000	Weak transcription	K562	blood
32	chr11:47147000-47158600	Weak transcription	Fetal Lung	lung
33	chr11:47147000-47159200	Weak transcription	Thymus	Thymus
34	chr11:47147600-47148800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:47147600-47152000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr11:47147600-47164200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr11:47147800-47148800	Enhancers	Pancreas	Pancrea
38	chr11:47148200-47164400	Weak transcription	NHEK	skin
39	chr11:47148400-47150400	Weak transcription	Fetal Intestine Small	intestine
40	chr11:47148600-47148800	Enhancers	Duodenum Mucosa	Duodenum
41	chr11:47148600-47149000	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr11:47148600-47149200	Enhancers	H9 Cell Line	embryonic stem cell
43	chr11:47148600-47155000	Weak transcription	Small Intestine	intestine

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