Variant report

Variant	rs60336509
Chromosome Location	chr7:104778700-104778701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:104776671..104779356-chr7:104780372..104782193,3	MCF-7	breast:
2	chr7:104738325..104741167-chr7:104777190..104779930,2	K562	blood:
3	chr7:104775891..104779088-chr7:104784065..104787152,3	K562	blood:
4	chr7:104778242..104779954-chr7:105027433..105030431,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135250	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs57369490	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57834400	1.00[AMR][1000 genomes]
rs58727441	1.00[AMR][1000 genomes]
rs60711291	1.00[AMR][1000 genomes]
rs61258714	1.00[AMR][1000 genomes]
rs73404009	1.00[AMR][1000 genomes]
rs73404010	1.00[AMR][1000 genomes]
rs73404019	1.00[AMR][1000 genomes]
rs73404022	1.00[AMR][1000 genomes]
rs73404030	1.00[AMR][1000 genomes]
rs73404039	1.00[AMR][1000 genomes]
rs73404052	1.00[AMR][1000 genomes]
rs73404060	1.00[AMR][1000 genomes]
rs73404066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73419738	1.00[AMR][1000 genomes]
rs73419746	1.00[AMR][1000 genomes]
rs73419748	1.00[AMR][1000 genomes]
rs73419776	1.00[AMR][1000 genomes]
rs73419784	1.00[AMR][1000 genomes]
rs73419799	1.00[AMR][1000 genomes]
rs73419801	1.00[AMR][1000 genomes]
rs73421715	1.00[AMR][1000 genomes]
rs73421732	1.00[AMR][1000 genomes]
rs73421755	1.00[AMR][1000 genomes]
rs73421758	1.00[AMR][1000 genomes]
rs73421762	1.00[AMR][1000 genomes]
rs73714170	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888927	chr7:104614664-104781644	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	esv34588	chr7:104737612-105153242	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv2757233	chr7:104758250-105208492	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv2759549	chr7:104758250-105208492	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv8196	chr7:104763559-105155978	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv34580	chr7:104763580-105153242	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	esv2758127	chr7:104766707-105110581	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:104678000-104812200	Strong transcription	Dnd41	blood
2	chr7:104740400-104787400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:104752800-104807400	Weak transcription	Fetal Brain Male	brain
4	chr7:104753800-104822000	Weak transcription	Small Intestine	intestine
5	chr7:104754400-104850400	Weak transcription	Fetal Kidney	kidney
6	chr7:104755200-104782000	Weak transcription	Colonic Mucosa	Colon
7	chr7:104755600-104790400	Weak transcription	NH-A	brain
8	chr7:104756400-104779400	Weak transcription	A549	lung
9	chr7:104756400-104806600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:104759800-104788600	Strong transcription	Primary B cells from cord blood	blood
11	chr7:104760400-104781800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr7:104760800-104781600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:104761000-104804600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr7:104761200-104787200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr7:104762400-104787200	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr7:104762800-104785000	Strong transcription	Primary T cells from cord blood	blood
17	chr7:104763200-104785000	Strong transcription	Fetal Intestine Large	intestine
18	chr7:104763400-104787000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:104763800-104784600	Strong transcription	Fetal Muscle Leg	muscle
20	chr7:104763800-104787400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:104764400-104785000	Strong transcription	Fetal Stomach	stomach
22	chr7:104764400-104785800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:104764800-104783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:104766600-104785600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr7:104766800-104779800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr7:104767400-104786200	Weak transcription	Pancreas	Pancrea
27	chr7:104769800-104787000	Strong transcription	Thymus	Thymus
28	chr7:104770000-104787000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr7:104770200-104787800	Strong transcription	Fetal Thymus	thymus
30	chr7:104770400-104785200	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr7:104771000-104781000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr7:104771200-104784400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:104771600-104780000	Genic enhancers	Brain Cingulate Gyrus	brain
34	chr7:104772000-104780400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr7:104772200-104779800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:104772600-104779000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr7:104772600-104780000	Genic enhancers	Brain Inferior Temporal Lobe	brain
38	chr7:104773000-104779000	Weak transcription	GM12878-XiMat	blood
39	chr7:104773000-104780000	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr7:104773200-104782200	Weak transcription	Fetal Lung	lung
41	chr7:104773200-104783400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr7:104773400-104779200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr7:104773400-104779400	Weak transcription	Rectal Smooth Muscle	rectum
44	chr7:104773400-104786800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr7:104773600-104779400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr7:104773600-104782000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr7:104773800-104779200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr7:104773800-104779400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:104774000-104779400	Weak transcription	Liver	Liver
50	chr7:104774000-104779600	Weak transcription	Ovary	ovary

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