Variant report

Variant	rs6036640
Chromosome Location	chr20:24076005-24076006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1006194	0.83[EUR][1000 genomes]
rs2005624	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2013710	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2208012	0.92[EUR][1000 genomes]
rs6036644	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036645	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036650	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6036653	0.96[EUR][1000 genomes]
rs6036654	0.96[EUR][1000 genomes]
rs6036664	0.92[EUR][1000 genomes]
rs6049389	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049390	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049394	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049403	0.98[EUR][1000 genomes]
rs6049416	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6049417	0.91[EUR][1000 genomes]
rs6049419	0.91[EUR][1000 genomes]
rs6049432	0.84[CEU][hapmap]
rs721314	0.91[EUR][1000 genomes]
rs761864	0.80[EUR][1000 genomes]
rs761865	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs761868	0.84[CEU][hapmap]
rs761869	0.84[CEU][hapmap]
rs858140	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs858141	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs858144	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs858145	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs910775	0.94[EUR][1000 genomes]
rs974784	0.95[EUR][1000 genomes]
rs974785	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24075000-24078400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:24075000-24081000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr20:24075200-24076200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr20:24075400-24076400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:24075400-24077000	Enhancers	NHEK	skin
6	chr20:24075400-24077200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr20:24075400-24077200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr20:24075400-24077400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:24075600-24076200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr20:24075800-24076200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr20:24075800-24076200	Enhancers	HMEC	breast
12	chr20:24075800-24076800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr20:24076000-24076200	Enhancers	Pancreas	Pancrea
14	chr20:24076000-24076200	Enhancers	Spleen	Spleen
15	chr20:24076000-24076600	Weak transcription	Fetal Kidney	kidney
16	chr20:24076000-24078000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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