Variant report

Variant	rs6036642
Chromosome Location	chr20:24079492-24079493
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs34097439	0.82[ASN][1000 genomes]
rs6036639	0.95[ASN][1000 genomes]
rs6036641	0.97[ASN][1000 genomes]
rs6036643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036647	0.93[ASN][1000 genomes]
rs6049384	0.92[ASN][1000 genomes]
rs6049385	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6049387	0.96[ASN][1000 genomes]
rs6049388	0.96[ASN][1000 genomes]
rs6049391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049395	0.93[ASN][1000 genomes]
rs6114474	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24075000-24081000	Enhancers	Placenta Amnion	Placenta Amnion
2	chr20:24076200-24082800	Weak transcription	HMEC	breast
3	chr20:24077400-24081200	Weak transcription	Pancreas	Pancrea
4	chr20:24077800-24082800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr20:24078000-24081200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr20:24078400-24081000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr20:24078800-24079800	Weak transcription	Placenta	Placenta
8	chr20:24079200-24079800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr20:24079200-24079800	Enhancers	A549	lung
10	chr20:24079200-24080400	Enhancers	NH-A	brain
11	chr20:24079200-24081400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr20:24079200-24081400	Enhancers	Osteobl	bone
13	chr20:24079200-24081800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr20:24079200-24085200	Enhancers	NHEK	skin
15	chr20:24079400-24079600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr20:24079400-24080000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr20:24079400-24080200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr20:24079400-24080200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr20:24079400-24080200	Enhancers	HUVEC	blood vessel
20	chr20:24079400-24080400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr20:24079400-24080400	Enhancers	Ovary	ovary
22	chr20:24079400-24084400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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