Variant report

Variant	rs6036647
Chromosome Location	chr20:24081367-24081368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24080843..24083360-chr20:24088770..24090295,2	MCF-7	breast:
2	chr20:23870451..23870966-chr20:24081176..24081813,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1160365	0.87[EUR][1000 genomes]
rs34016617	1.00[EUR][1000 genomes]
rs34096340	0.87[EUR][1000 genomes]
rs34097439	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34123386	0.87[EUR][1000 genomes]
rs35671594	0.87[EUR][1000 genomes]
rs35675087	1.00[EUR][1000 genomes]
rs6036634	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6036639	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6036641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6036642	0.93[ASN][1000 genomes]
rs6036643	0.93[ASN][1000 genomes]
rs6049376	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6049384	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6049385	0.92[ASN][1000 genomes]
rs6049387	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049388	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049391	0.93[ASN][1000 genomes]
rs6049395	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114474	0.92[ASN][1000 genomes]
rs6132697	1.00[EUR][1000 genomes]
rs6132698	1.00[EUR][1000 genomes]
rs6132699	0.89[EUR][1000 genomes]
rs6132702	0.87[EUR][1000 genomes]
rs6138198	0.97[EUR][1000 genomes]
rs6138199	1.00[EUR][1000 genomes]
rs6138206	0.95[EUR][1000 genomes]
rs6138211	0.87[EUR][1000 genomes]
rs6138213	0.87[EUR][1000 genomes]
rs62193667	1.00[EUR][1000 genomes]
rs74173629	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24076200-24082800	Weak transcription	HMEC	breast
2	chr20:24077800-24082800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr20:24079200-24081400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr20:24079200-24081400	Enhancers	Osteobl	bone
5	chr20:24079200-24081800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr20:24079200-24085200	Enhancers	NHEK	skin
7	chr20:24079400-24084400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr20:24079800-24082800	Weak transcription	A549	lung
9	chr20:24080000-24081600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr20:24080000-24083200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr20:24080200-24082600	Weak transcription	HUVEC	blood vessel
12	chr20:24080200-24083200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr20:24080400-24083000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr20:24080800-24081400	Enhancers	NH-A	brain
15	chr20:24081000-24081400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr20:24081000-24081400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr20:24081000-24081600	Enhancers	Primary T cells fromperipheralblood	blood
18	chr20:24081000-24081600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr20:24081000-24081600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr20:24081000-24083800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr20:24081200-24081400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr20:24081200-24081600	Enhancers	Pancreas	Pancrea
23	chr20:24081200-24081600	Enhancers	Dnd41	blood
24	chr20:24081200-24081800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr20:24081200-24084400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links