Variant report

Variant	rs6036650
Chromosome Location	chr20:24087507-24087508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1006194	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2005624	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2013710	0.94[EUR][1000 genomes]
rs2208012	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6036640	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6036644	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6036645	0.97[EUR][1000 genomes]
rs6036653	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6036654	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6036664	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6049389	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6049390	0.97[EUR][1000 genomes]
rs6049392	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6049394	0.97[EUR][1000 genomes]
rs6049403	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049416	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6049417	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6049419	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs721314	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs761865	0.96[EUR][1000 genomes]
rs858140	0.91[EUR][1000 genomes]
rs858141	0.89[EUR][1000 genomes]
rs858144	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs858145	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs910775	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs974784	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs974785	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3412027	chr20:24087324-24087558	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24082600-24088000	Enhancers	HUVEC	blood vessel
2	chr20:24083400-24096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:24086200-24087600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr20:24086200-24088000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr20:24087000-24088000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr20:24087400-24088000	Enhancers	Liver	Liver
7	chr20:24087400-24089200	Weak transcription	Osteobl	bone
8	chr20:24087400-24089400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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