Variant report

Variant	rs6036802
Chromosome Location	chr20:24430302-24430303
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1012631	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1012632	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1326300	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2143505	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2143506	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2206643	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2206644	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2386952	0.83[EUR][1000 genomes]
rs6036785	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6036786	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6036787	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6036788	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6036790	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6036791	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6036792	0.86[JPT][hapmap];0.84[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6036793	0.86[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6036796	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6036798	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6036800	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6036801	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6036803	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6049679	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6049680	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6049681	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6049683	0.87[AMR][1000 genomes]
rs6049686	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6049687	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6049689	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6049690	0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6049692	0.86[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6049694	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6049696	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6049697	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6049698	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6049699	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6049700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6049701	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6114723	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6114731	0.84[AFR][1000 genomes]
rs722834	0.86[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs926609	0.86[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv458954	chr20:24410195-24431225	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv585733	chr20:24410195-24431225	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24425400-24432200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:24426600-24435800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr20:24427200-24432200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr20:24427400-24436600	Weak transcription	Brain Hippocampus Middle	brain
5	chr20:24428200-24431400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr20:24429000-24433200	Weak transcription	Gastric	stomach
7	chr20:24429000-24434200	Weak transcription	Dnd41	blood
8	chr20:24429400-24430600	Weak transcription	Fetal Intestine Large	intestine
9	chr20:24429400-24430800	Weak transcription	Stomach Mucosa	stomach
10	chr20:24429400-24431200	Weak transcription	Fetal Intestine Small	intestine
11	chr20:24429400-24434400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr20:24429600-24432400	Weak transcription	Thymus	Thymus
13	chr20:24429800-24434400	Weak transcription	Fetal Thymus	thymus
14	chr20:24430000-24434200	Weak transcription	Primary T cells from cord blood	blood

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