Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13039850	0.80[JPT][hapmap]
rs1326299	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1409371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1575873	0.85[ASN][1000 genomes]
rs1980821	0.87[JPT][hapmap]
rs1980822	0.87[JPT][hapmap]
rs1980823	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2018095	0.88[ASN][1000 genomes]
rs4815275	0.90[ASN][1000 genomes]
rs4815277	0.82[EUR][1000 genomes]
rs4815278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6036847	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs6049805	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs6076238	0.93[ASN][1000 genomes]
rs6083555	0.87[JPT][hapmap]
rs6083558	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6083562	0.93[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6114770	0.81[ASN][1000 genomes]
rs6132750	0.93[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs6138330	0.93[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs6138331	0.93[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs6138332	0.82[JPT][hapmap]
rs8126241	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24525400-24541800	Weak transcription	Left Ventricle	heart
2	chr20:24527400-24531000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr20:24527400-24540200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr20:24528800-24534000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr20:24528800-24534600	Weak transcription	Fetal Brain Male	brain
6	chr20:24528800-24538400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr20:24528800-24546400	Weak transcription	Aorta	Aorta
8	chr20:24530800-24531000	Enhancers	Brain Anterior Caudate	brain
9	chr20:24530800-24531000	Enhancers	Fetal Heart	heart

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