Variant report

Variant	rs60381457
Chromosome Location	chr3:102333057-102333058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1391428	1.00[EUR][1000 genomes]
rs1498073	1.00[EUR][1000 genomes]
rs1498074	1.00[EUR][1000 genomes]
rs1511612	1.00[EUR][1000 genomes]
rs58165786	1.00[EUR][1000 genomes]
rs58703338	1.00[EUR][1000 genomes]
rs58794437	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59584731	1.00[EUR][1000 genomes]
rs59692363	1.00[EUR][1000 genomes]
rs61629586	1.00[EUR][1000 genomes]
rs7628402	1.00[EUR][1000 genomes]
rs7629742	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007340	chr3:102108954-102725099	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv536676	chr3:102108954-102725099	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1009392	chr3:102199756-102631205	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv1843717	chr3:102251299-102364297	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:102332600-102333400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:102332600-102333400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:102332600-102333600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:102332800-102333200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:102332800-102333400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:102332800-102333800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr3:102332800-102334600	Enhancers	Fetal Lung	lung
8	chr3:102333000-102333400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr3:102333000-102333400	Enhancers	H1 Cell Line	embryonic stem cell
10	chr3:102333000-102333400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:102333000-102333600	Weak transcription	Fetal Brain Female	brain
12	chr3:102333000-102334000	Enhancers	Hela-S3	cervix
13	chr3:102333000-102334400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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