Variant report

Variant	rs60387330
Chromosome Location	chr4:143787294-143787295
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55675363	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55920161	1.00[AMR][1000 genomes]
rs55947218	1.00[AMR][1000 genomes]
rs56330901	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57206134	1.00[AMR][1000 genomes]
rs57770652	1.00[AMR][1000 genomes]
rs58070744	1.00[AMR][1000 genomes]
rs58269423	1.00[AMR][1000 genomes]
rs58306079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58701532	1.00[AMR][1000 genomes]
rs60285299	1.00[AMR][1000 genomes]
rs61538113	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61741556	1.00[AMR][1000 genomes]
rs73850528	1.00[AMR][1000 genomes]
rs73850569	1.00[AMR][1000 genomes]
rs73850572	1.00[AMR][1000 genomes]
rs73850573	1.00[AMR][1000 genomes]
rs73850574	1.00[AMR][1000 genomes]
rs73850575	1.00[AMR][1000 genomes]
rs73850577	1.00[AMR][1000 genomes]
rs73850580	1.00[AMR][1000 genomes]
rs73850581	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73850620	1.00[AMR][1000 genomes]
rs73850621	1.00[AMR][1000 genomes]
rs73850622	1.00[AMR][1000 genomes]
rs73850641	1.00[AMR][1000 genomes]
rs73850662	1.00[AMR][1000 genomes]
rs73853610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7654096	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7668584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7690525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv880175	chr4:143779613-143892252	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143787200-143788200	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links