Variant report

Variant	rs60395025
Chromosome Location	chr4:143549446-143549447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10002341	0.81[AFR][1000 genomes]
rs13435036	0.85[AFR][1000 genomes]
rs1373037	0.82[AFR][1000 genomes]
rs1425526	0.83[AFR][1000 genomes]
rs17016533	0.85[AFR][1000 genomes]
rs28497887	0.88[AFR][1000 genomes]
rs7667002	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143537000-143575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143548000-143556400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:143548200-143550200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:143548600-143549800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:143548800-143552200	Weak transcription	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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