Variant report

Variant	rs60428528
Chromosome Location	chr1:224972399-224972400
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:224968181..224972472-chr1:224972623..224976659,4	MCF-7	breast:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10399959	1.00[EUR][1000 genomes]
rs1078794	1.00[EUR][1000 genomes]
rs10915724	1.00[EUR][1000 genomes]
rs10915732	1.00[EUR][1000 genomes]
rs11810181	0.86[AFR][1000 genomes]
rs12079808	1.00[EUR][1000 genomes]
rs12086802	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12097593	1.00[EUR][1000 genomes]
rs13376360	1.00[EUR][1000 genomes]
rs16854034	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16854471	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16855953	1.00[EUR][1000 genomes]
rs16856828	1.00[EUR][1000 genomes]
rs2060556	1.00[EUR][1000 genomes]
rs2244108	1.00[EUR][1000 genomes]
rs2244109	1.00[EUR][1000 genomes]
rs2244198	1.00[EUR][1000 genomes]
rs2245097	1.00[EUR][1000 genomes]
rs2254430	1.00[EUR][1000 genomes]
rs2449262	1.00[EUR][1000 genomes]
rs2449264	1.00[EUR][1000 genomes]
rs2449265	1.00[EUR][1000 genomes]
rs2449267	1.00[EUR][1000 genomes]
rs2449268	1.00[EUR][1000 genomes]
rs2449270	1.00[EUR][1000 genomes]
rs2449271	1.00[EUR][1000 genomes]
rs2449272	1.00[EUR][1000 genomes]
rs2449288	1.00[EUR][1000 genomes]
rs2449289	1.00[EUR][1000 genomes]
rs2449290	1.00[EUR][1000 genomes]
rs2449294	1.00[EUR][1000 genomes]
rs2449317	1.00[EUR][1000 genomes]
rs2449319	1.00[EUR][1000 genomes]
rs2449321	1.00[EUR][1000 genomes]
rs2449323	1.00[EUR][1000 genomes]
rs2449324	1.00[EUR][1000 genomes]
rs2489299	1.00[EUR][1000 genomes]
rs2489305	1.00[EUR][1000 genomes]
rs2489307	1.00[EUR][1000 genomes]
rs2489309	1.00[EUR][1000 genomes]
rs2489315	1.00[EUR][1000 genomes]
rs2489316	1.00[EUR][1000 genomes]
rs2489323	1.00[EUR][1000 genomes]
rs2489326	1.00[EUR][1000 genomes]
rs2489329	1.00[EUR][1000 genomes]
rs2489331	1.00[EUR][1000 genomes]
rs2489333	1.00[EUR][1000 genomes]
rs2489334	1.00[EUR][1000 genomes]
rs2489335	1.00[EUR][1000 genomes]
rs2489336	1.00[EUR][1000 genomes]
rs2489339	1.00[EUR][1000 genomes]
rs2489340	1.00[EUR][1000 genomes]
rs2489342	1.00[EUR][1000 genomes]
rs2489345	1.00[EUR][1000 genomes]
rs2489347	1.00[EUR][1000 genomes]
rs2489349	1.00[EUR][1000 genomes]
rs2489350	1.00[EUR][1000 genomes]
rs2489351	1.00[EUR][1000 genomes]
rs2489354	1.00[EUR][1000 genomes]
rs2489356	1.00[EUR][1000 genomes]
rs2489357	1.00[EUR][1000 genomes]
rs2489358	1.00[EUR][1000 genomes]
rs2489359	1.00[EUR][1000 genomes]
rs2489360	1.00[EUR][1000 genomes]
rs2501065	1.00[EUR][1000 genomes]
rs2501074	1.00[EUR][1000 genomes]
rs2501076	1.00[EUR][1000 genomes]
rs2501077	1.00[EUR][1000 genomes]
rs2501079	1.00[EUR][1000 genomes]
rs2501088	1.00[EUR][1000 genomes]
rs2501136	1.00[EUR][1000 genomes]
rs2501137	1.00[EUR][1000 genomes]
rs2501142	1.00[EUR][1000 genomes]
rs2501144	1.00[EUR][1000 genomes]
rs2501148	1.00[EUR][1000 genomes]
rs2501150	1.00[EUR][1000 genomes]
rs2501152	1.00[EUR][1000 genomes]
rs2501157	1.00[EUR][1000 genomes]
rs2516334	1.00[EUR][1000 genomes]
rs2662910	1.00[EUR][1000 genomes]
rs2662911	1.00[EUR][1000 genomes]
rs2662913	1.00[EUR][1000 genomes]
rs2802546	1.00[EUR][1000 genomes]
rs2802547	1.00[EUR][1000 genomes]
rs2802567	1.00[EUR][1000 genomes]
rs2802736	1.00[EUR][1000 genomes]
rs3102105	1.00[EUR][1000 genomes]
rs4121159	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4256778	1.00[EUR][1000 genomes]
rs57535083	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58205526	1.00[EUR][1000 genomes]
rs58651151	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58823550	1.00[EUR][1000 genomes]
rs59730608	1.00[EUR][1000 genomes]
rs59839860	1.00[EUR][1000 genomes]
rs61329501	1.00[EUR][1000 genomes]
rs6426164	1.00[EUR][1000 genomes]
rs6693680	1.00[EUR][1000 genomes]
rs6694400	1.00[EUR][1000 genomes]
rs6698293	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73129804	1.00[EUR][1000 genomes]
rs7550589	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9426101	1.00[EUR][1000 genomes]
rs9426103	1.00[EUR][1000 genomes]
rs9426104	1.00[EUR][1000 genomes]
rs9426147	1.00[EUR][1000 genomes]
rs9426156	1.00[EUR][1000 genomes]
rs9426159	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524125	chr1:224902054-225021860	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224958000-224972400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:224970000-224973000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:224970400-224974400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:224971000-224975400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:224971000-224975400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:224971400-224972800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr1:224971400-224972800	Enhancers	NHLF	lung
8	chr1:224971400-224973000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:224971400-224973600	Enhancers	Osteobl	bone
10	chr1:224971400-224975400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr1:224971400-224975400	Enhancers	NHDF-Ad	bronchial
12	chr1:224971600-224972600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:224971600-224973400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr1:224972000-224972600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:224972000-224972600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:224972000-224973000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:224972000-224973600	ZNF genes & repeats	GM12878-XiMat	blood
18	chr1:224972200-224972400	Enhancers	HSMM	muscle
19	chr1:224972200-224972400	Enhancers	HSMMtube	muscle
20	chr1:224972200-224972600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:224972200-224973000	Enhancers	NH-A	brain
22	chr1:224972200-224973400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr1:224972200-224974400	Enhancers	Dnd41	blood
24	chr1:224972200-224975200	Enhancers	HMEC	breast

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