Variant report

Variant	rs60462266
Chromosome Location	chr11:71013371-71013372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70977277..70979953-chr11:71011556..71013433,2	MCF-7	breast:
2	chr11:71012038..71014623-chr11:71075700..71077246,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs55743867	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55805348	0.86[AFR][1000 genomes]
rs55863521	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55929954	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56100131	0.89[AFR][1000 genomes]
rs56705610	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56966971	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56967953	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57009928	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57063205	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58360857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58854299	0.84[AFR][1000 genomes]
rs59055707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59147071	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59209313	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59439599	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59444222	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59793283	1.00[AMR][1000 genomes]
rs60092825	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60504655	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60552266	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60599873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532375	0.87[AFR][1000 genomes]
rs73532387	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532392	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532402	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534114	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534119	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534121	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534124	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534125	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534129	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534130	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534131	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534133	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534144	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73534148	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536025	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536027	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73536029	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70998600-71017400	Weak transcription	Pancreas	Pancrea
2	chr11:71007400-71014200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:71010400-71014000	Enhancers	NHDF-Ad	bronchial
4	chr11:71011000-71014200	Enhancers	Hela-S3	cervix
5	chr11:71012600-71013400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:71012600-71013600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:71012600-71014000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:71012600-71014000	Enhancers	A549	lung
9	chr11:71012800-71013600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:71012800-71013600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr11:71012800-71013600	Enhancers	Lung	lung
12	chr11:71012800-71013800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:71012800-71013800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:71012800-71013800	Enhancers	Fetal Lung	lung
15	chr11:71012800-71014200	Enhancers	NHLF	lung
16	chr11:71013000-71013400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr11:71013000-71013600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:71013000-71013600	Enhancers	Esophagus	oesophagus
19	chr11:71013000-71013600	Flanking Bivalent TSS/Enh	HepG2	liver
20	chr11:71013000-71013800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:71013000-71013800	Bivalent Enhancer	Fetal Stomach	stomach
22	chr11:71013000-71013800	Enhancers	Osteobl	bone
23	chr11:71013000-71014000	Enhancers	HSMM	muscle
24	chr11:71013200-71013400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:71013200-71013400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:71013200-71013600	Bivalent Enhancer	Fetal Muscle Leg	muscle
27	chr11:71013200-71014000	Enhancers	Placenta	Placenta
28	chr11:71013200-71014200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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