Variant report

Variant	rs6049384
Chromosome Location	chr20:24071355-24071356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GGTLC1-2	chr20:24071226-24071602	NONHSAT079099

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1160365	0.87[EUR][1000 genomes]
rs34016617	1.00[EUR][1000 genomes]
rs34096340	0.87[EUR][1000 genomes]
rs34097439	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34123386	0.87[EUR][1000 genomes]
rs35671594	0.87[EUR][1000 genomes]
rs35675087	1.00[EUR][1000 genomes]
rs6036634	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6036639	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6036641	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6036642	0.92[ASN][1000 genomes]
rs6036643	0.92[ASN][1000 genomes]
rs6036647	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6049376	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6049385	0.93[ASN][1000 genomes]
rs6049387	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6049388	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6049391	0.92[ASN][1000 genomes]
rs6049395	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6114474	0.93[ASN][1000 genomes]
rs6132697	1.00[EUR][1000 genomes]
rs6132698	1.00[EUR][1000 genomes]
rs6132699	0.89[EUR][1000 genomes]
rs6132702	0.87[EUR][1000 genomes]
rs6138198	0.97[EUR][1000 genomes]
rs6138199	1.00[EUR][1000 genomes]
rs6138206	0.95[EUR][1000 genomes]
rs6138211	0.87[EUR][1000 genomes]
rs6138213	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs62193667	1.00[EUR][1000 genomes]
rs74173629	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24068200-24072000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr20:24070200-24076000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:24070800-24075800	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links