Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:24084790..24086401-chr20:24090603..24093438,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs58712671	0.96[ASN][1000 genomes]
rs60160675	0.96[ASN][1000 genomes]
rs6036637	0.83[AMR][1000 genomes]
rs6036649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6036659	0.96[ASN][1000 genomes]
rs6036660	0.96[ASN][1000 genomes]
rs6049396	0.94[ASN][1000 genomes]
rs6049397	0.94[ASN][1000 genomes]
rs6049398	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6049401	0.94[ASN][1000 genomes]
rs6049404	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6049405	0.91[ASN][1000 genomes]
rs6049406	0.91[ASN][1000 genomes]
rs6049407	0.91[ASN][1000 genomes]
rs6049408	0.91[ASN][1000 genomes]
rs6049409	0.91[ASN][1000 genomes]
rs6049410	0.96[ASN][1000 genomes]
rs6049411	0.91[ASN][1000 genomes]
rs6049420	0.96[ASN][1000 genomes]
rs6049421	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6076187	0.93[ASN][1000 genomes]
rs6106785	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6114490	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8115661	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3326510	chr20:24086035-24086320	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24082600-24088000	Enhancers	HUVEC	blood vessel
2	chr20:24083400-24096200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr20:24083600-24086200	Weak transcription	HMEC	breast
4	chr20:24084000-24086600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:24084400-24086200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr20:24084400-24086200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr20:24085200-24087400	Weak transcription	Liver	Liver
8	chr20:24085800-24086200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr20:24085800-24087400	Enhancers	NHEK	skin
10	chr20:24086000-24087400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr20:24086000-24087400	Enhancers	NH-A	brain
12	chr20:24086000-24087400	Enhancers	Osteobl	bone

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