Variant report

Variant	rs6049599
Chromosome Location	chr20:24308914-24308915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11905416	1.00[EUR][1000 genomes]
rs11907190	1.00[EUR][1000 genomes]
rs11907337	1.00[EUR][1000 genomes]
rs11907441	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11908251	1.00[EUR][1000 genomes]
rs1475408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1603419	1.00[EUR][1000 genomes]
rs57839314	1.00[EUR][1000 genomes]
rs6036734	1.00[EUR][1000 genomes]
rs6036735	1.00[EUR][1000 genomes]
rs6036736	1.00[EUR][1000 genomes]
rs6036738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6036739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6036740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60401696	1.00[EUR][1000 genomes]
rs6049582	1.00[EUR][1000 genomes]
rs6049583	1.00[EUR][1000 genomes]
rs6049584	1.00[EUR][1000 genomes]
rs6049586	1.00[EUR][1000 genomes]
rs6049587	1.00[EUR][1000 genomes]
rs6049588	1.00[EUR][1000 genomes]
rs6049591	1.00[EUR][1000 genomes]
rs6049592	1.00[EUR][1000 genomes]
rs6049596	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6049597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6049600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6049602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6049605	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6114706	1.00[EUR][1000 genomes]
rs7273213	1.00[EUR][1000 genomes]
rs73339982	1.00[EUR][1000 genomes]
rs73341652	1.00[EUR][1000 genomes]
rs7346006	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833945	chr20:24163437-24349462	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24298000-24313000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr20:24299800-24317800	Weak transcription	Thymus	Thymus
3	chr20:24308400-24309000	Active TSS	Spleen	Spleen

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