Variant report

Variant	rs6049644
Chromosome Location	chr20:24370600-24370601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1997790	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050202	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103702	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2206646	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2892180	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6036762	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6036766	0.95[EUR][1000 genomes]
rs6036770	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6049637	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049640	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049641	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049656	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6049660	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6106872	0.89[EUR][1000 genomes]
rs6106873	0.89[EUR][1000 genomes]
rs6132729	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs932418	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24366800-24371600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr20:24367400-24371600	Enhancers	Fetal Thymus	thymus
3	chr20:24368400-24371600	Enhancers	Thymus	Thymus
4	chr20:24368800-24371600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr20:24369000-24371400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr20:24369000-24371600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr20:24369200-24371600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr20:24369400-24370600	Enhancers	Primary B cells from peripheral blood	blood
9	chr20:24369400-24372200	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr20:24369600-24370600	Enhancers	Primary B cells from cord blood	blood
11	chr20:24369600-24370600	Bivalent Enhancer	Fetal Muscle Leg	muscle
12	chr20:24369600-24370800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr20:24369600-24371600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr20:24369800-24370600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr20:24369800-24371000	Weak transcription	Brain Substantia Nigra	brain
16	chr20:24369800-24371200	Enhancers	Primary hematopoietic stem cells	blood
17	chr20:24369800-24371400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr20:24369800-24371400	Flanking Active TSS	Dnd41	blood
19	chr20:24369800-24371600	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr20:24370000-24370600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr20:24370000-24371200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr20:24370200-24370800	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr20:24370200-24370800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr20:24370200-24371000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr20:24370400-24370600	Enhancers	Right Atrium	heart
26	chr20:24370400-24370800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr20:24370400-24370800	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr20:24370400-24371600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr20:24370400-24372800	Enhancers	Primary T cells from cord blood	blood
30	chr20:24370600-24371000	Weak transcription	Primary B cells from peripheral blood	blood
31	chr20:24370600-24371600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr20:24370600-24376200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr20:24370600-24387400	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links