Variant report
Variant | rs6049650 |
---|---|
Chromosome Location | chr20:24381100-24381101 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs28802916 | 0.81[AFR][1000 genomes] |
rs56698917 | 1.00[AMR][1000 genomes] |
rs57242312 | 1.00[AMR][1000 genomes] |
rs58411424 | 1.00[AMR][1000 genomes] |
rs58816199 | 1.00[AMR][1000 genomes] |
rs60071381 | 1.00[AMR][1000 genomes] |
rs6036757 | 1.00[AMR][1000 genomes] |
rs6036761 | 1.00[AMR][1000 genomes] |
rs6036764 | 1.00[AMR][1000 genomes] |
rs6036765 | 1.00[AMR][1000 genomes] |
rs6036795 | 1.00[AMR][1000 genomes] |
rs6036799 | 1.00[AMR][1000 genomes] |
rs6049646 | 1.00[AMR][1000 genomes] |
rs6049649 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6049655 | 0.94[AFR][1000 genomes] |
rs6049658 | 1.00[AMR][1000 genomes] |
rs6049661 | 1.00[AMR][1000 genomes] |
rs6049664 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs6049684 | 1.00[AMR][1000 genomes] |
rs6049685 | 1.00[AMR][1000 genomes] |
rs6106890 | 1.00[AMR][1000 genomes] |
rs6114680 | 1.00[AMR][1000 genomes] |
rs6114737 | 1.00[AMR][1000 genomes] |
rs6114742 | 1.00[AMR][1000 genomes] |
rs61327850 | 1.00[AMR][1000 genomes] |
rs61331067 | 1.00[AMR][1000 genomes] |
rs61466179 | 1.00[AMR][1000 genomes] |
rs7267437 | 1.00[AMR][1000 genomes] |
rs73334429 | 1.00[AMR][1000 genomes] |
rs73334458 | 1.00[AMR][1000 genomes] |
rs73334471 | 1.00[AMR][1000 genomes] |
rs73334489 | 1.00[AMR][1000 genomes] |
rs73334499 | 1.00[AMR][1000 genomes] |
rs73336247 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73338050 | 1.00[AMR][1000 genomes] |
rs73339909 | 1.00[AMR][1000 genomes] |
rs73339961 | 1.00[AMR][1000 genomes] |
rs73339963 | 1.00[AMR][1000 genomes] |
rs73339986 | 1.00[AMR][1000 genomes] |
rs73341661 | 1.00[AMR][1000 genomes] |
rs73341667 | 1.00[AMR][1000 genomes] |
rs73341672 | 1.00[AMR][1000 genomes] |
rs73341695 | 1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv9793 | chr20:23939613-24734850 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
2 | nsv1058146 | chr20:24210196-24531087 | Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
3 | nsv833946 | chr20:24320375-24490702 | Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:24370600-24387400 | Weak transcription | Right Atrium | heart |