Variant report

Variant	rs6049656
Chromosome Location	chr20:24386780-24386781
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1997790	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2050202	0.80[EUR][1000 genomes]
rs2103702	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2206646	0.80[EUR][1000 genomes]
rs2892180	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6036762	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6036766	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6036770	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6049640	0.80[EUR][1000 genomes]
rs6049641	0.80[EUR][1000 genomes]
rs6049644	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6049660	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6106872	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6106873	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6132729	0.80[EUR][1000 genomes]
rs932418	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv833946	chr20:24320375-24490702	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24370600-24387400	Weak transcription	Right Atrium	heart
2	chr20:24384000-24390200	Weak transcription	Fetal Brain Female	brain
3	chr20:24384200-24387400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr20:24386400-24387200	Enhancers	Primary T cells from cord blood	blood
5	chr20:24386400-24387800	Enhancers	Fetal Thymus	thymus
6	chr20:24386400-24388000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr20:24386400-24388400	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr20:24386400-24388600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr20:24386400-24388600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr20:24386600-24388000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr20:24386600-24388200	Enhancers	Dnd41	blood
12	chr20:24386600-24388400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr20:24386600-24388400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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