The 2.0 version of rSNPBase

Variant report

Variant rs604974
Chromosome Location chr1:85905705-85905706
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85886400-85914200 Weak transcription HSMMtube muscle
2 chr1:85892200-85906200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr1:85893800-85906200 Weak transcription Rectal Smooth Muscle rectum
4 chr1:85893800-85916800 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr1:85899200-85914800 Weak transcription Esophagus oesophagus
6 chr1:85901400-85923000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:85902400-85906200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:85902600-85912200 Weak transcription Pancreas Pancrea
9 chr1:85903000-85906000 Weak transcription Ovary ovary
10 chr1:85903000-85906800 Weak transcription Lung lung
11 chr1:85903400-85907000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
12 chr1:85903600-85906600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
13 chr1:85903600-85906800 Enhancers Adipose Nuclei Adipose
14 chr1:85903600-85907000 Enhancers HepG2 liver
15 chr1:85903600-85907200 Enhancers Muscle Satellite Cultured Cells --
16 chr1:85903600-85907200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:85903600-85907600 Enhancers NHDF-Ad bronchial
18 chr1:85903800-85906800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
19 chr1:85903800-85906800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
20 chr1:85903800-85907200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
21 chr1:85903800-85907400 Enhancers HUVEC blood vessel
22 chr1:85903800-85907400 Enhancers NHLF lung
23 chr1:85903800-85907400 Enhancers Osteobl bone
24 chr1:85904200-85906000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:85904200-85906800 Enhancers NH-A brain
26 chr1:85904400-85906600 Weak transcription Psoas Muscle Psoas
27 chr1:85904400-85906600 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr1:85904400-85907000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:85904400-85914800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
30 chr1:85904600-85910200 Weak transcription Fetal Intestine Large intestine
31 chr1:85904800-85906600 Enhancers HSMM muscle
32 chr1:85904800-85907200 Enhancers Cortex derived primary cultured neurospheres brain
33 chr1:85905000-85906400 Weak transcription Liver Liver
34 chr1:85905000-85910200 Weak transcription Fetal Intestine Small intestine
35 chr1:85905000-85912400 Weak transcription HUES48 Cell Line embryonic stem cell
36 chr1:85905200-85906000 Weak transcription iPS-20b Cell Line embryonic stem cell
37 chr1:85905200-85906000 Weak transcription Fetal Muscle Leg muscle
38 chr1:85905200-85906000 Weak transcription Fetal Stomach stomach
39 chr1:85905200-85906400 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr1:85905200-85906600 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr1:85905200-85912000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
42 chr1:85905200-85912600 Weak transcription ES-I3 Cell Line embryonic stem cell
43 chr1:85905200-85912800 Weak transcription Left Ventricle heart
44 chr1:85905200-85913000 Weak transcription Fetal Kidney kidney
45 chr1:85905200-85914800 Weak transcription Small Intestine intestine
46 chr1:85905400-85907600 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
47 chr1:85905400-85913400 Weak transcription Fetal Lung lung
48 chr1:85905600-85906600 Weak transcription Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015