Variant report

Variant	rs60497472
Chromosome Location	chr2:210450687-210450688
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10198751	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12613572	0.82[EUR][1000 genomes]
rs12615372	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12616589	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12620654	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12621444	0.82[EUR][1000 genomes]
rs12622979	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12992342	0.91[ASN][1000 genomes]
rs13419929	0.89[ASN][1000 genomes]
rs1396779	0.99[ASN][1000 genomes]
rs1509465	0.87[ASN][1000 genomes]
rs1509469	0.82[ASN][1000 genomes]
rs1509470	0.81[ASN][1000 genomes]
rs16843329	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs169636	0.83[ASN][1000 genomes]
rs2048250	0.99[ASN][1000 genomes]
rs2366112	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2663648	0.92[ASN][1000 genomes]
rs2663649	0.81[ASN][1000 genomes]
rs2663651	0.81[ASN][1000 genomes]
rs2663653	0.81[ASN][1000 genomes]
rs2663659	0.89[ASN][1000 genomes]
rs2710474	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2710475	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2710479	0.80[ASN][1000 genomes]
rs2710486	0.90[ASN][1000 genomes]
rs288079	0.82[ASN][1000 genomes]
rs288081	0.82[ASN][1000 genomes]
rs288084	0.82[ASN][1000 genomes]
rs288087	0.81[ASN][1000 genomes]
rs288088	0.81[ASN][1000 genomes]
rs34455059	0.89[ASN][1000 genomes]
rs34850994	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35409969	0.89[ASN][1000 genomes]
rs55911510	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56023260	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56164239	0.81[ASN][1000 genomes]
rs56677957	0.83[ASN][1000 genomes]
rs56775639	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56853570	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57383822	0.82[EUR][1000 genomes]
rs57781584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58636345	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59032380	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60138527	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60359169	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6726061	0.99[ASN][1000 genomes]
rs6733319	0.91[ASN][1000 genomes]
rs6752348	0.82[EUR][1000 genomes]
rs73071034	0.81[EUR][1000 genomes]
rs73071071	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73071085	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7568260	0.82[EUR][1000 genomes]
rs7593381	0.81[EUR][1000 genomes]
rs906831	0.92[ASN][1000 genomes]
rs9288410	0.92[ASN][1000 genomes]
rs962475	0.81[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210443600-210461000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:210444800-210456800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:210446200-210456800	Weak transcription	Brain Anterior Caudate	brain
4	chr2:210446600-210461600	Weak transcription	Brain Angular Gyrus	brain
5	chr2:210447800-210460400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr2:210448600-210452000	Enhancers	Fetal Brain Male	brain
7	chr2:210449000-210451200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr2:210449200-210451000	Weak transcription	Brain Germinal Matrix	brain
9	chr2:210449600-210451800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:210449800-210451200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr2:210450400-210452400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:210450600-210450800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:210450600-210451000	Enhancers	Fetal Brain Female	brain

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