Variant report

Variant	rs6049759
Chromosome Location	chr20:24509228-24509229
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13041310	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1555892	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2386954	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2386956	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4283490	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6036832	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6049755	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049757	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049758	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6049760	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6049765	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6049768	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6049771	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6049775	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6076233	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6076235	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114752	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6114757	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6114760	0.88[EUR][1000 genomes]
rs6114768	0.82[EUR][1000 genomes]
rs6132742	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6132743	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6138316	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24503400-24511000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr20:24503800-24511200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr20:24504000-24525800	Weak transcription	Aorta	Aorta
4	chr20:24505000-24509800	Weak transcription	Brain Anterior Caudate	brain
5	chr20:24505000-24509800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr20:24505000-24510800	Weak transcription	Brain Germinal Matrix	brain
7	chr20:24505600-24509400	Weak transcription	Brain Angular Gyrus	brain
8	chr20:24505600-24509600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr20:24506800-24510400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr20:24508200-24509400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr20:24508200-24523800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr20:24509200-24509400	Enhancers	Brain Substantia Nigra	brain
13	chr20:24509200-24510200	Enhancers	Brain Hippocampus Middle	brain
14	chr20:24509200-24510600	Enhancers	Fetal Brain Male	brain

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