Variant report

Variant	rs6049781
Chromosome Location	chr20:24530151-24530152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1326299	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1409371	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs1980823	0.92[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2018095	0.83[EUR][1000 genomes]
rs4815278	0.88[CEU][hapmap];0.92[EUR][1000 genomes]
rs6076238	0.80[EUR][1000 genomes]
rs6083558	0.96[CEU][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6132750	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6138330	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6138331	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1058146	chr20:24210196-24531087	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24523600-24530800	Weak transcription	Fetal Heart	heart
2	chr20:24525400-24541800	Weak transcription	Left Ventricle	heart
3	chr20:24527400-24530600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr20:24527400-24531000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr20:24527400-24540200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr20:24528400-24530800	Weak transcription	Brain Anterior Caudate	brain
7	chr20:24528600-24530200	Enhancers	Brain Cingulate Gyrus	brain
8	chr20:24528800-24534000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr20:24528800-24534600	Weak transcription	Fetal Brain Male	brain
10	chr20:24528800-24538400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr20:24528800-24546400	Weak transcription	Aorta	Aorta
12	chr20:24529200-24530200	Weak transcription	Brain Angular Gyrus	brain
13	chr20:24529800-24530800	Enhancers	Brain Substantia Nigra	brain
14	chr20:24530000-24530800	Enhancers	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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