Variant report

Variant	rs6049907
Chromosome Location	chr20:24702543-24702544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13037286	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13037383	0.92[ASN][1000 genomes]
rs2064435	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223829	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2424622	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2424623	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424626	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424628	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2424634	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2892218	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4813528	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56097502	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6049925	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6076253	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8117631	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910236	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs926709	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv3332519	chr20:24535099-24815615	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1061412	chr20:24629468-24887869	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv544216	chr20:24629468-24887869	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24695400-24708200	Weak transcription	Thymus	Thymus
2	chr20:24700400-24702800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr20:24701000-24704200	Enhancers	Fetal Brain Male	brain
4	chr20:24701200-24702600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr20:24701800-24702600	Weak transcription	Fetal Muscle Leg	muscle
6	chr20:24702400-24704200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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