Variant report

Variant	rs60503142
Chromosome Location	chr14:72454200-72454201
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72452453..72454592-chr14:72458480..72460555,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1009017	0.92[ASN][1000 genomes]
rs11158920	0.84[EUR][1000 genomes]
rs11158926	0.88[ASN][1000 genomes]
rs11158927	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11620690	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11622507	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623492	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11623535	0.99[ASN][1000 genomes]
rs11625937	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11627768	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628133	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11628574	0.83[EUR][1000 genomes]
rs12148043	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1476745	0.88[ASN][1000 genomes]
rs17093750	0.84[EUR][1000 genomes]
rs17104493	0.81[EUR][1000 genomes]
rs17105346	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105566	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17105606	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17768361	0.88[ASN][1000 genomes]
rs1987722	0.93[ASN][1000 genomes]
rs1987723	0.92[ASN][1000 genomes]
rs2010846	0.93[ASN][1000 genomes]
rs2010850	0.93[ASN][1000 genomes]
rs2052015	0.82[EUR][1000 genomes]
rs2238277	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2332705	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3784055	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3784056	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4243640	0.93[ASN][1000 genomes]
rs4350510	0.95[ASN][1000 genomes]
rs4354860	0.93[ASN][1000 genomes]
rs4899409	0.85[EUR][1000 genomes]
rs4902958	0.85[EUR][1000 genomes]
rs4902966	0.93[ASN][1000 genomes]
rs56743778	0.84[EUR][1000 genomes]
rs58890880	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59631889	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs699358	0.93[ASN][1000 genomes]
rs72734102	0.83[EUR][1000 genomes]
rs72735921	0.84[EUR][1000 genomes]
rs72735923	0.84[EUR][1000 genomes]
rs72735952	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72735955	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72735956	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7493353	0.82[EUR][1000 genomes]
rs7494103	0.83[EUR][1000 genomes]
rs8013467	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72446000-72457000	Weak transcription	Right Ventricle	heart
2	chr14:72452200-72456600	Enhancers	Fetal Brain Male	brain
3	chr14:72452400-72454400	Enhancers	Fetal Muscle Leg	muscle
4	chr14:72453000-72454200	Enhancers	Left Ventricle	heart
5	chr14:72453200-72454800	Enhancers	Right Atrium	heart
6	chr14:72453200-72457000	Enhancers	Fetal Heart	heart
7	chr14:72453600-72457000	Strong transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:72454000-72454800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:72454200-72455800	Weak transcription	Left Ventricle	heart

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