Variant report

Variant	rs6050785
Chromosome Location	chr20:25660895-25660896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:25660568..25662949-chr20:25667578..25669475,2	K562	blood:
2	chr20:25649313..25652237-chr20:25660876..25663526,2	K562	blood:
3	chr20:25658816..25662008-chr20:25664532..25667896,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236542	Chromatin interaction
ENSG00000130684	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2064276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6037216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6037221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6050780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6050817	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6050826	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6050836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25653000-25663600	Strong transcription	HSMM	muscle
2	chr20:25653200-25662800	Strong transcription	Fetal Lung	lung
3	chr20:25653400-25661000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:25653400-25662400	Strong transcription	Liver	Liver
5	chr20:25653400-25663600	Strong transcription	Dnd41	blood
6	chr20:25653400-25664200	Strong transcription	Stomach Smooth Muscle	stomach
7	chr20:25653600-25662600	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr20:25653600-25663200	Strong transcription	HepG2	liver
9	chr20:25653800-25664200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr20:25654000-25662600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr20:25654000-25663800	Weak transcription	Small Intestine	intestine
12	chr20:25655000-25661400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr20:25656400-25662600	Strong transcription	Adipose Nuclei	Adipose
14	chr20:25656600-25667200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr20:25657200-25664400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr20:25657200-25666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr20:25657200-25667200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr20:25657200-25674200	Weak transcription	Fetal Heart	heart
19	chr20:25657400-25661400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr20:25657400-25661400	Weak transcription	Primary B cells from cord blood	blood
21	chr20:25657400-25662000	Strong transcription	Brain Anterior Caudate	brain
22	chr20:25657400-25663800	Weak transcription	HSMMtube	muscle
23	chr20:25657400-25666000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr20:25657400-25666000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr20:25657400-25666000	Weak transcription	Psoas Muscle	Psoas
26	chr20:25657400-25666600	Weak transcription	Pancreas	Pancrea
27	chr20:25657400-25676200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr20:25657600-25661200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr20:25657600-25661600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr20:25657600-25661600	Weak transcription	Colon Smooth Muscle	Colon
31	chr20:25657600-25661600	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr20:25657600-25661800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr20:25657600-25663600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr20:25657600-25664000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr20:25657600-25665800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr20:25657600-25665800	Weak transcription	Right Ventricle	heart
37	chr20:25657600-25665800	Weak transcription	Spleen	Spleen
38	chr20:25657600-25666000	Weak transcription	Brain Substantia Nigra	brain
39	chr20:25657600-25666000	Weak transcription	Esophagus	oesophagus
40	chr20:25657600-25666000	Weak transcription	Gastric	stomach
41	chr20:25657600-25666000	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr20:25657600-25666600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr20:25657600-25667200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr20:25657600-25672200	Weak transcription	H9 Cell Line	embryonic stem cell
45	chr20:25657600-25672600	Weak transcription	Fetal Brain Male	brain
46	chr20:25657600-25676000	Weak transcription	Stomach Mucosa	stomach
47	chr20:25657600-25676200	Weak transcription	Hela-S3	cervix
48	chr20:25657600-25676200	Weak transcription	K562	blood
49	chr20:25657600-25676400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr20:25657800-25661400	Weak transcription	Muscle Satellite Cultured Cells	--

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