Variant report

Variant	rs60507886
Chromosome Location	chr20:24099266-24099267
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13433317	0.84[AFR][1000 genomes]
rs2224231	0.84[AFR][1000 genomes]
rs58097245	0.84[AFR][1000 genomes]
rs59960570	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60840217	0.84[AFR][1000 genomes]
rs6106789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73905109	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9793	chr20:23939613-24734850	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1056491	chr20:23955040-24105080	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3328348	chr20:24095746-24285830	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24097000-24100000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
2	chr20:24097200-24100000	Enhancers	Fetal Muscle Leg	muscle
3	chr20:24097400-24099600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr20:24097600-24099400	Enhancers	NH-A	brain
5	chr20:24097800-24099800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr20:24097800-24100000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr20:24097800-24100200	Enhancers	Osteobl	bone
8	chr20:24098000-24099600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr20:24098000-24099600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr20:24098200-24100200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr20:24098200-24100600	Enhancers	Ovary	ovary
12	chr20:24098200-24100800	Enhancers	HUVEC	blood vessel
13	chr20:24098400-24099800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr20:24098400-24099800	Bivalent Enhancer	Adipose Nuclei	Adipose
15	chr20:24098400-24099800	Enhancers	Fetal Lung	lung
16	chr20:24098400-24099800	Enhancers	Rectal Smooth Muscle	rectum
17	chr20:24098400-24100000	Enhancers	Lung	lung
18	chr20:24098400-24100800	Enhancers	Fetal Thymus	thymus
19	chr20:24098600-24099400	Enhancers	Colon Smooth Muscle	Colon
20	chr20:24098600-24099400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr20:24098600-24099600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr20:24098800-24100600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr20:24099000-24099600	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr20:24099000-24099800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr20:24099000-24099800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr20:24099000-24100200	Enhancers	Spleen	Spleen
27	chr20:24099200-24099400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr20:24099200-24099400	Bivalent Enhancer	Left Ventricle	heart
29	chr20:24099200-24099400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
30	chr20:24099200-24099600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr20:24099200-24100000	Enhancers	Gastric	stomach
32	chr20:24099200-24100000	Enhancers	Pancreas	Pancrea
33	chr20:24099200-24100000	Enhancers	A549	lung
34	chr20:24099200-24100000	Enhancers	NHLF	lung
35	chr20:24099200-24100200	Enhancers	NHEK	skin
36	chr20:24099200-24100400	Enhancers	Esophagus	oesophagus
37	chr20:24099200-24100600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr20:24099200-24100600	Enhancers	Fetal Stomach	stomach
39	chr20:24099200-24101000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links