Variant report

Variant	rs6050836
Chromosome Location	chr20:25700327-25700328
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2064276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6037216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6037221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6050780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6050785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6050817	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6050826	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912834	chr20:25615272-25756336	Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1056288	chr20:25662941-25744711	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1057618	chr20:25665455-25744711	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv525033	chr20:25688001-25730968	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3451414	chr20:25696452-25700550	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv17092	chr20:25698651-25707971	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	n/a	n/a	inside rSNPs	diseases
7	esv3411467	chr20:25698707-25700769	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:25677800-25701000	Weak transcription	Pancreas	Pancrea
2	chr20:25694200-25705400	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr20:25698600-25700600	Weak transcription	Ovary	ovary
4	chr20:25699200-25700800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr20:25699200-25701200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr20:25699200-25701200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr20:25699200-25701200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr20:25699200-25701400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr20:25699200-25701400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr20:25699200-25701400	Weak transcription	Brain Hippocampus Middle	brain
11	chr20:25699400-25700800	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr20:25699400-25702600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr20:25699600-25700400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr20:25699600-25700400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr20:25699600-25700800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr20:25699600-25701400	Enhancers	Fetal Thymus	thymus
17	chr20:25699800-25707400	Weak transcription	Psoas Muscle	Psoas
18	chr20:25700000-25700400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr20:25700000-25700400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr20:25700000-25700400	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr20:25700000-25700600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr20:25700000-25700600	Flanking Active TSS	Dnd41	blood
23	chr20:25700000-25700600	Enhancers	NHEK	skin
24	chr20:25700000-25701200	Enhancers	Gastric	stomach
25	chr20:25700000-25701400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr20:25700000-25701400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr20:25700000-25708000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr20:25700200-25700400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr20:25700200-25700400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr20:25700200-25700400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr20:25700200-25700400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr20:25700200-25700400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
33	chr20:25700200-25700400	Flanking Active TSS	HepG2	liver
34	chr20:25700200-25700600	Enhancers	Primary T cells from cord blood	blood
35	chr20:25700200-25701000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr20:25700200-25701200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr20:25700200-25701400	Enhancers	Esophagus	oesophagus
38	chr20:25700200-25701400	Enhancers	Thymus	Thymus

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