Variant report

Variant	rs60514832
Chromosome Location	chr14:65710707-65710708
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65703266..65707350-chr14:65709369..65712516,3	K562	blood:
2	chr14:65709860..65711374-chr14:65803916..65806781,2	MCF-7	breast:
3	chr14:65709528..65711067-chr14:65712244..65714160,2	MCF-7	breast:
4	chr14:65691185..65703550-chr14:65706694..65715001,23	MCF-7	breast:
5	chr14:65630625..65634047-chr14:65708648..65711135,3	MCF-7	breast:
6	chr14:65710525..65712418-chr14:65882853..65884868,2	MCF-7	breast:
7	chr14:65708443..65711390-chr14:65727270..65732025,4	MCF-7	breast:
8	chr14:65583338..65585299-chr14:65708352..65712057,3	MCF-7	breast:
9	chr14:65708389..65714331-chr14:65715596..65724154,17	MCF-7	breast:
10	chr14:65708249..65716123-chr14:65876687..65882798,15	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction
ENSG00000258878	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12100604	1.00[EUR][1000 genomes]
rs12100674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102614	1.00[EUR][1000 genomes]
rs17102621	1.00[EUR][1000 genomes]
rs28465145	1.00[EUR][1000 genomes]
rs56966413	1.00[EUR][1000 genomes]
rs59324651	1.00[EUR][1000 genomes]
rs60053410	1.00[EUR][1000 genomes]
rs61004469	1.00[EUR][1000 genomes]
rs7154681	1.00[EUR][1000 genomes]
rs73270852	1.00[EUR][1000 genomes]
rs73270859	1.00[EUR][1000 genomes]
rs73270874	1.00[EUR][1000 genomes]
rs8010623	1.00[EUR][1000 genomes]
rs8012057	1.00[EUR][1000 genomes]
rs8014977	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564934	chr14:65706758-65712872	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
4	nsv976853	chr14:65708032-65723266	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3530160	chr14:65709103-65713060	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3530161	chr14:65709131-65713034	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3530162	chr14:65709136-65713012	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3530163	chr14:65709233-65712969	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv18660	chr14:65709258-65712968	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv564935	chr14:65710211-65711755	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv564936	chr14:65710211-65711837	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv564937	chr14:65710211-65712309	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
13	nsv516371	chr14:65710211-65712420	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv564938	chr14:65710211-65712420	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	nsv817636	chr14:65710211-65712420	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv564939	chr14:65710211-65712667	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
17	nsv564940	chr14:65710211-65712872	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv564941	chr14:65710301-65711755	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	nsv564942	chr14:65710301-65712126	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	nsv564943	chr14:65710301-65712872	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv564944	chr14:65710301-65713314	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	esv1795814	chr14:65710580-65711755	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	esv1798267	chr14:65710580-65711755	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	nsv564945	chr14:65710580-65712309	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	nsv564946	chr14:65710580-65712872	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65703400-65711800	Enhancers	Fetal Intestine Small	intestine
3	chr14:65706600-65718200	Weak transcription	Spleen	Spleen
4	chr14:65706800-65711000	Weak transcription	Hela-S3	cervix
5	chr14:65706800-65716200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:65707000-65710800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:65707000-65716200	Weak transcription	Brain Anterior Caudate	brain
8	chr14:65708400-65716200	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:65708400-65716200	Weak transcription	Brain Substantia Nigra	brain
10	chr14:65709000-65713200	Enhancers	Fetal Intestine Large	intestine
11	chr14:65709200-65711400	Flanking Active TSS	A549	lung
12	chr14:65709400-65711000	Flanking Active TSS	HepG2	liver
13	chr14:65709600-65711200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr14:65709800-65710800	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr14:65709800-65711000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr14:65709800-65711000	Enhancers	Placenta	Placenta
17	chr14:65709800-65711200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:65709800-65711600	Enhancers	NH-A	brain
19	chr14:65710000-65710800	Enhancers	K562	blood
20	chr14:65710000-65711400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr14:65710000-65711600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:65710000-65711800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:65710000-65712800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr14:65710200-65710800	Enhancers	Dnd41	blood
25	chr14:65710200-65711000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:65710400-65711000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:65710400-65711000	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr14:65710400-65711000	Enhancers	Pancreas	Pancrea
29	chr14:65710400-65711200	Enhancers	Muscle Satellite Cultured Cells	--
30	chr14:65710400-65711200	Enhancers	HMEC	breast
31	chr14:65710400-65711200	Enhancers	HSMM	muscle
32	chr14:65710400-65711200	Enhancers	NHLF	lung
33	chr14:65710400-65711400	Enhancers	NHDF-Ad	bronchial
34	chr14:65710400-65711600	Enhancers	Primary T cells fromperipheralblood	blood
35	chr14:65710400-65711600	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr14:65710400-65711600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr14:65710400-65711600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr14:65710400-65711600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr14:65710400-65711600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr14:65710400-65711600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr14:65710400-65711600	Enhancers	Fetal Thymus	thymus
42	chr14:65710400-65711600	Enhancers	Small Intestine	intestine
43	chr14:65710400-65711800	Enhancers	Stomach Mucosa	stomach
44	chr14:65710600-65711000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:65710600-65711000	Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr14:65710600-65711000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr14:65710600-65711200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr14:65710600-65711200	Enhancers	Duodenum Mucosa	Duodenum
49	chr14:65710600-65711200	Enhancers	Thymus	Thymus
50	chr14:65710600-65711200	Enhancers	NHEK	skin

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