Variant report

Variant	rs60518924
Chromosome Location	chr6:164109865-164109866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs55683496	0.94[AFR][1000 genomes]
rs56029215	0.83[AFR][1000 genomes]
rs58250488	1.00[AFR][1000 genomes]
rs59109163	1.00[AFR][1000 genomes]
rs59173227	0.83[AFR][1000 genomes]
rs59348084	1.00[AFR][1000 genomes]
rs60334591	0.83[AFR][1000 genomes]
rs6920091	0.83[AFR][1000 genomes]
rs73784840	0.88[AFR][1000 genomes]
rs73784855	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv2758092	chr6:163992064-164161903	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	esv2759490	chr6:163992064-164161903	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv1019107	chr6:164056423-164144164	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164102600-164110200	Weak transcription	Fetal Heart	heart
2	chr6:164108800-164113000	Weak transcription	Esophagus	oesophagus
3	chr6:164109000-164116600	Weak transcription	Pancreas	Pancrea
4	chr6:164109400-164110000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:164109400-164110800	Enhancers	Brain Angular Gyrus	brain
6	chr6:164109400-164111000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:164109400-164111200	Enhancers	Brain Hippocampus Middle	brain
8	chr6:164109600-164111200	Enhancers	Brain Anterior Caudate	brain
9	chr6:164109800-164110200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:164109800-164110800	Enhancers	HSMMtube	muscle
11	chr6:164109800-164111000	Enhancers	Brain Substantia Nigra	brain
12	chr6:164109800-164111200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:164109800-164111200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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