Variant report

Variant	rs60524701
Chromosome Location	chr11:70856631-70856632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70856232..70858594-chr11:70962827..70965344,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162105	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs17431746	0.96[EUR][1000 genomes]
rs28811899	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28876818	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34402475	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35136877	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4348928	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4944282	0.92[ASN][1000 genomes]
rs55726773	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55753840	0.90[EUR][1000 genomes]
rs55757613	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56035448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56144630	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56181437	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56291131	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56341503	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56393668	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58093994	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58713366	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59052115	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60079515	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61582992	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66521164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66668954	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7116150	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7123599	0.90[EUR][1000 genomes]
rs7125114	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957115	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72957676	0.97[EUR][1000 genomes]
rs72957677	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72957679	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72957686	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72957688	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72957690	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72957691	0.93[EUR][1000 genomes]
rs72957699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959503	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959507	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959509	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959517	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72959521	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72959524	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7931474	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9888203	0.84[EUR][1000 genomes]
rs9888294	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9888299	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70824000-70861600	Weak transcription	A549	lung
2	chr11:70832200-70860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:70832200-70863600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:70832200-70864400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:70841200-70857400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:70842400-70860600	Weak transcription	Fetal Intestine Large	intestine
7	chr11:70842600-70860800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:70843200-70856800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:70843400-70857200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr11:70851400-70857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:70851600-70857400	Weak transcription	Gastric	stomach
12	chr11:70851600-70857600	Weak transcription	Placenta	Placenta
13	chr11:70852000-70857400	Weak transcription	Liver	Liver
14	chr11:70854400-70858800	Strong transcription	Fetal Intestine Small	intestine
15	chr11:70854400-70858800	Strong transcription	Pancreas	Pancrea
16	chr11:70854400-70859800	Strong transcription	HepG2	liver
17	chr11:70856200-70858600	Strong transcription	Fetal Stomach	stomach
18	chr11:70856400-70858200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:70856400-70858600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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