The 2.0 version of rSNPBase

Variant report

Variant rs60533889
Chromosome Location chr1:215790380-215790381
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:112 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:215741800-215809800 Weak transcription Colonic Mucosa Colon
2 chr1:215750000-215805000 Weak transcription Lung lung
3 chr1:215750200-215790400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr1:215750200-215795400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr1:215750200-215796000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
6 chr1:215750200-215804400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:215750200-215809200 Weak transcription Gastric stomach
8 chr1:215753200-215792200 Weak transcription Aorta Aorta
9 chr1:215755800-215804800 Weak transcription ES-WA7 Cell Line embryonic stem cell
10 chr1:215765200-215790400 Weak transcription Esophagus oesophagus
11 chr1:215768000-215791800 Weak transcription Fetal Brain Male brain
12 chr1:215768400-215790600 Weak transcription Right Ventricle heart
13 chr1:215773000-215790400 Weak transcription Sigmoid Colon Sigmoid Colon
14 chr1:215773600-215792400 Weak transcription Brain Angular Gyrus brain
15 chr1:215773800-215798600 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr1:215774000-215795200 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr1:215777200-215792200 Weak transcription Rectal Smooth Muscle rectum
18 chr1:215778800-215791600 Weak transcription Brain Substantia Nigra brain
19 chr1:215779400-215792200 Weak transcription Ovary ovary
20 chr1:215779400-215792400 Weak transcription HMEC breast
21 chr1:215779400-215793400 Weak transcription NHLF lung
22 chr1:215779400-215799200 Weak transcription Psoas Muscle Psoas
23 chr1:215780000-215794000 Weak transcription Primary B cells from peripheral blood blood
24 chr1:215781000-215797200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
25 chr1:215781200-215794800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr1:215781200-215797400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:215782200-215799400 Weak transcription Fetal Heart heart
28 chr1:215782800-215790800 Weak transcription GM12878-XiMat blood
29 chr1:215782800-215797200 Weak transcription Dnd41 blood
30 chr1:215783000-215798800 Weak transcription Brain Inferior Temporal Lobe brain
31 chr1:215784200-215793800 Weak transcription Primary T helper cells fromperipheralblood blood
32 chr1:215784200-215795200 Weak transcription Primary neutrophils fromperipheralblood blood
33 chr1:215784800-215796600 Weak transcription Spleen Spleen
34 chr1:215785800-215792200 Weak transcription Hela-S3 cervix
35 chr1:215786000-215792200 Weak transcription NHEK skin
36 chr1:215786200-215791000 Strong transcription Fetal Stomach stomach
37 chr1:215786400-215792000 Weak transcription Brain Germinal Matrix brain
38 chr1:215786600-215792400 Weak transcription NH-A brain
39 chr1:215786600-215809400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr1:215786800-215790400 Weak transcription HSMMtube muscle
41 chr1:215786800-215790600 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr1:215786800-215792200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr1:215786800-215794000 Weak transcription Thymus Thymus
44 chr1:215786800-215796200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
45 chr1:215786800-215797400 Weak transcription Fetal Brain Female brain
46 chr1:215786800-215798200 Weak transcription Brain Cingulate Gyrus brain
47 chr1:215786800-215799000 Weak transcription Small Intestine intestine
48 chr1:215786800-215801000 Weak transcription H9 Cell Line embryonic stem cell
49 chr1:215787000-215792000 Weak transcription Brain Anterior Caudate brain
50 chr1:215787000-215792200 Weak transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015