Variant report

Variant	rs60539757
Chromosome Location	chr18:24803214-24803215
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11659209	0.99[AFR][1000 genomes]
rs11659338	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11660925	0.96[EUR][1000 genomes]
rs11661183	0.96[EUR][1000 genomes]
rs11661240	0.95[EUR][1000 genomes]
rs11663112	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11663416	0.95[EUR][1000 genomes]
rs11664424	0.95[EUR][1000 genomes]
rs11874060	0.97[EUR][1000 genomes]
rs11875079	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1426870	0.96[EUR][1000 genomes]
rs1593604	0.95[EUR][1000 genomes]
rs1593605	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16943384	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16943395	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16943397	0.94[EUR][1000 genomes]
rs2006887	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55756763	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56159471	0.96[AFR][1000 genomes]
rs57588756	0.95[AFR][1000 genomes]
rs58269864	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59648588	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61499406	0.96[EUR][1000 genomes]
rs7228535	0.99[AFR][1000 genomes]
rs7231906	0.96[EUR][1000 genomes]
rs7241555	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7242600	0.95[EUR][1000 genomes]
rs72639454	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72639455	0.97[EUR][1000 genomes]
rs72639456	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73408433	0.90[EUR][1000 genomes]
rs7342997	0.97[EUR][1000 genomes]
rs8087045	0.96[EUR][1000 genomes]
rs8087183	0.96[EUR][1000 genomes]
rs8094742	0.95[EUR][1000 genomes]
rs9635909	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9635980	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909474	chr18:24683823-24832023	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv530515	chr18:24704459-24883897	Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24793200-24803400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr18:24795600-24803800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:24803200-24803400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr18:24803200-24804400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr18:24803200-24804800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links