Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10150071	0.82[ASN][1000 genomes]
rs10483838	0.97[EUR][1000 genomes]
rs12884777	0.86[ASN][1000 genomes]
rs17104979	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17105032	0.96[ASN][1000 genomes]
rs17105061	0.96[ASN][1000 genomes]
rs1860105	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1989628	0.96[ASN][1000 genomes]
rs2190872	0.88[ASN][1000 genomes]
rs2238274	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238275	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238276	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238278	0.88[ASN][1000 genomes]
rs2283422	0.86[ASN][1000 genomes]
rs2332701	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4902960	0.95[ASN][1000 genomes]
rs4902961	0.83[ASN][1000 genomes]
rs4902965	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56661004	0.86[ASN][1000 genomes]
rs56731686	0.96[ASN][1000 genomes]
rs58002698	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143919	0.82[ASN][1000 genomes]
rs7156200	0.86[ASN][1000 genomes]
rs720391	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73293246	0.86[ASN][1000 genomes]
rs74060440	0.86[ASN][1000 genomes]
rs764624	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72446000-72457000	Weak transcription	Right Ventricle	heart
2	chr14:72452200-72456600	Enhancers	Fetal Brain Male	brain
3	chr14:72453200-72457000	Enhancers	Fetal Heart	heart
4	chr14:72453600-72457000	Strong transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:72454200-72455800	Weak transcription	Left Ventricle	heart
6	chr14:72454800-72455000	Enhancers	Fetal Muscle Leg	muscle
7	chr14:72454800-72455800	Weak transcription	Right Atrium	heart
8	chr14:72454800-72456800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search: