Variant report

Variant	rs60552299
Chromosome Location	chr14:70600262-70600263
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70567567..70570227-chr14:70598996..70601077,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10444731	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10444732	0.91[EUR][1000 genomes]
rs10444733	0.91[EUR][1000 genomes]
rs10483824	0.90[EUR][1000 genomes]
rs11158837	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11158839	0.90[EUR][1000 genomes]
rs11158840	0.90[EUR][1000 genomes]
rs1122707	0.91[EUR][1000 genomes]
rs1122708	0.91[EUR][1000 genomes]
rs11850592	0.90[EUR][1000 genomes]
rs12147147	0.91[EUR][1000 genomes]
rs12147341	0.91[EUR][1000 genomes]
rs12147621	0.91[EUR][1000 genomes]
rs12147634	0.91[EUR][1000 genomes]
rs17107798	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17107893	0.90[EUR][1000 genomes]
rs17107920	0.90[EUR][1000 genomes]
rs17107925	0.89[EUR][1000 genomes]
rs17175527	0.91[EUR][1000 genomes]
rs17175597	0.91[EUR][1000 genomes]
rs17175695	0.91[EUR][1000 genomes]
rs17175848	0.90[EUR][1000 genomes]
rs17175939	0.90[EUR][1000 genomes]
rs17175960	0.88[EUR][1000 genomes]
rs17765251	0.90[EUR][1000 genomes]
rs17765304	0.91[EUR][1000 genomes]
rs17765370	0.90[EUR][1000 genomes]
rs17765449	0.90[EUR][1000 genomes]
rs17765575	0.90[EUR][1000 genomes]
rs17765586	0.90[EUR][1000 genomes]
rs2605	0.91[EUR][1000 genomes]
rs4902779	0.85[EUR][1000 genomes]
rs56251207	0.91[EUR][1000 genomes]
rs56266899	0.91[EUR][1000 genomes]
rs56374433	0.91[EUR][1000 genomes]
rs56935411	0.89[EUR][1000 genomes]
rs61977430	0.89[EUR][1000 genomes]
rs61977438	0.91[EUR][1000 genomes]
rs61977439	0.91[EUR][1000 genomes]
rs61977440	0.91[EUR][1000 genomes]
rs61977443	0.89[EUR][1000 genomes]
rs61977444	0.89[EUR][1000 genomes]
rs61977445	0.91[EUR][1000 genomes]
rs61977446	0.91[EUR][1000 genomes]
rs61977448	0.91[EUR][1000 genomes]
rs61977449	0.91[EUR][1000 genomes]
rs61977450	0.90[EUR][1000 genomes]
rs61977451	0.91[EUR][1000 genomes]
rs61977453	0.91[EUR][1000 genomes]
rs61977454	0.91[EUR][1000 genomes]
rs61977455	0.91[EUR][1000 genomes]
rs61977456	0.91[EUR][1000 genomes]
rs61977457	0.91[EUR][1000 genomes]
rs61978160	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61978162	0.91[EUR][1000 genomes]
rs61978164	0.91[EUR][1000 genomes]
rs61978165	0.91[EUR][1000 genomes]
rs61978175	0.90[EUR][1000 genomes]
rs61978178	0.90[EUR][1000 genomes]
rs61978184	0.83[EUR][1000 genomes]
rs61978185	0.83[EUR][1000 genomes]
rs61978186	0.90[EUR][1000 genomes]
rs61978187	0.90[EUR][1000 genomes]
rs61978188	0.90[EUR][1000 genomes]
rs61978189	0.90[EUR][1000 genomes]
rs7140688	0.91[EUR][1000 genomes]
rs7143465	0.90[EUR][1000 genomes]
rs7144377	0.90[EUR][1000 genomes]
rs7148926	0.90[EUR][1000 genomes]
rs7149304	0.90[EUR][1000 genomes]
rs7158149	0.90[EUR][1000 genomes]
rs7158867	0.91[EUR][1000 genomes]
rs7159555	0.90[EUR][1000 genomes]
rs8011864	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8015011	0.91[EUR][1000 genomes]
rs8015205	0.91[EUR][1000 genomes]
rs8018678	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs998306	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832826	chr14:70559589-70723464	Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70591400-70603200	Weak transcription	Psoas Muscle	Psoas
2	chr14:70597400-70605000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:70599200-70600400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:70599400-70600400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:70599600-70600400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:70599800-70600400	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links